Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0838
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07240.1 68415.m00831 Ulp1 protease family protein contains P...    28   6.8  
At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein ...    27   8.9  
At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family pr...    27   8.9  

>At2g07240.1 68415.m00831 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 928

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 225 DRREHFFCDFIDISVLFARHILR 293
           +R++HF    +D+ + F+RH+LR
Sbjct: 710 ERKKHFSSKVMDVLIKFSRHLLR 732


>At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 374

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 537 CIKMLSYLSHVTVDNYKSESQTLYWPGISK*TWFVHSILFCFYLIMWFI 683
           CI + S +S V +       Q   W  + +  W V  +++CF + +WF+
Sbjct: 192 CIYIFS-MSAVYIKILMDHQQATVWRAMKESPWAVVLMIYCF-IALWFV 238


>At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family
           protein
          Length = 343

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  SFSHISRPVQPCCCGCSASRDVNLYIFTKN 113
           SF H ++    C C CS   ++   IF++N
Sbjct: 259 SFKHCNKRSDLCFCSCSPKTELKTTIFSQN 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,725,306
Number of Sequences: 28952
Number of extensions: 255340
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)