Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0837
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    44   0.004
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.043
UniRef50_Q0M1C6 Cluster: TonB-dependent receptor:TonB-dependent ...    33   5.0  
UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;...    33   8.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 44.0 bits (99), Expect = 0.004
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = +2

Query: 137 FLLPR*VDELTAHLVLSGYWSP 202
           FLL R VDELTAHLVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 40.3 bits (90), Expect = 0.043
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 325 AGWWYLPVRTHKRSYHQ 375
           A WWYLP RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q0M1C6 Cluster: TonB-dependent receptor:TonB-dependent
           receptor, plug precursor; n=1; Caulobacter sp. K31|Rep:
           TonB-dependent receptor:TonB-dependent receptor, plug
           precursor - Caulobacter sp. K31
          Length = 641

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 338 TYPCGLTRGPTTSKTVTVFDASANLRR*KSIIL 436
           T PCGLT G T       FD +AN RR KS +L
Sbjct: 561 TLPCGLTGGVTMQYVGHSFDNAANTRRLKSYVL 593


>UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;
           n=1; Kineococcus radiotolerans SRS30216|Rep:
           Transcriptional regulator, TetR family - Kineococcus
           radiotolerans SRS30216
          Length = 222

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 18/37 (48%), Positives = 19/37 (51%)
 Frame = +2

Query: 254 AQL*LQRLPHPSNRNALLLHGRNRQGGGTYPCGLTRG 364
           AQ  L  LP P  R A    G  R GGGT P G +RG
Sbjct: 185 AQAALDGLPRPPGRAAGPARGTTRSGGGTRPGGGSRG 221


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,194,387
Number of Sequences: 1657284
Number of extensions: 14106458
Number of successful extensions: 29970
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29960
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)