Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0837
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0280 + 28129750-28129868,28130677-28131145,28133605-281338...    29   4.6  

>01_06_0280 +
           28129750-28129868,28130677-28131145,28133605-28133802,
           28134168-28134412,28134749-28134907,28135491-28135578,
           28135983-28136264
          Length = 519

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 66  KENRAGRSSTPSPTFRNNNKQFFFFYCLDEWTSSQP 173
           KE    R S+ SP  R+NNK  F F  LDE+ +S P
Sbjct: 79  KEAPGARRSS-SPPIRSNNKS-FVFQPLDEYPTSSP 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,968,657
Number of Sequences: 37544
Number of extensions: 402346
Number of successful extensions: 875
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)