Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0837
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25040.1 68416.m03129 ER lumen protein retaining receptor, pu...    29   3.8  
At3g17360.1 68416.m02218 kinesin motor protein-related similar t...    29   3.8  
At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identi...    28   5.1  

>At3g25040.1 68416.m03129 ER lumen protein retaining receptor,
           putative / HDEL receptor, putative similar to SP|P35402
           ER lumen protein retaining receptor (HDEL receptor)
           {Arabidopsis thaliana}; contains Pfam profile PF00810:
           ER lumen protein retaining receptor
          Length = 215

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -3

Query: 585 YRLYSRVSKLVRYFFIVL*CF----IVHTKYSFVD 493
           +R Y R     R++F+VL CF    ++H K++F++
Sbjct: 85  HRTYDREQDTFRHWFLVLPCFLLALLIHEKFTFLE 119


>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
           KLP2 protein GB:CAA63826 from [Xenopus laevis]
          Length = 2008

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 3   KKQKSLR*SHTHT-GPFLKSRVKENRAGRSSTPSPTFRNNN 122
           +K +  R  H  T GP  K  V E RAG SS  +P   N N
Sbjct: 53  QKLEGTRAQHQRTLGPEKKFEVLEGRAGNSSDSNPKIVNRN 93


>At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identical
           to gi:1742956
          Length = 779

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 175 PGVKWLLEPIDIYNVNAPPTLRYKF*GSIIVTTA 276
           P VK  L  ID Y++ AP TL  K  GSI    A
Sbjct: 172 PEVKAYLNGIDAYSILAPSTLFVKIFGSIFGVAA 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,308
Number of Sequences: 28952
Number of extensions: 322197
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)