Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0836
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6KZ69 Cluster: Glutamyl-tRNA(Gln) amidotransferase sub...    36   0.72 
UniRef50_Q4D1U5 Cluster: Putative uncharacterized protein; n=2; ...    34   2.9  
UniRef50_Q1IHQ5 Cluster: Transcriptional regulator, ArsR family;...    33   8.8  

>UniRef50_Q6KZ69 Cluster: Glutamyl-tRNA(Gln) amidotransferase
           subunit B; n=1; Picrophilus torridus|Rep:
           Glutamyl-tRNA(Gln) amidotransferase subunit B -
           Picrophilus torridus
          Length = 591

 Score = 36.3 bits (80), Expect = 0.72
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = -3

Query: 675 LTLVKGNVELDVQRRSILDRLSRGTVSLGTFASTLPVTISSLF 547
           L+L+K  +E + +R+ +L+R+SR    LG F+ T+PV I   +
Sbjct: 230 LSLIKDVIEYETKRQKMLERISRIINDLGGFSYTMPVNIKDKY 272


>UniRef50_Q4D1U5 Cluster: Putative uncharacterized protein; n=2;
            Trypanosoma cruzi|Rep: Putative uncharacterized protein -
            Trypanosoma cruzi
          Length = 1403

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = -3

Query: 387  CFTTEVGRVAVPSREDSQEFLPPVKSSTL*LSLQAMCLKNSNSTRHI*CPESNSSTNS*M 208
            C TTE G   VPS E     L P   +   +   A   + +N+TR+  CP S S     +
Sbjct: 861  CITTEEGLTGVPSSEAKNTSLQPESKNASGMG-SAFPFRKTNNTRNPLCPFSFSHDIWML 919

Query: 207  CINIYHLAD 181
             +   HLAD
Sbjct: 920  AMLAIHLAD 928


>UniRef50_Q1IHQ5 Cluster: Transcriptional regulator, ArsR family;
           n=3; Bacteria|Rep: Transcriptional regulator, ArsR
           family - Acidobacteria bacterium (strain Ellin345)
          Length = 109

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -3

Query: 645 DVQRRSILDRLSRGTVSLGTFASTLPVTISSL 550
           D  RR++LDRLSRG +S+   A    VT++++
Sbjct: 17  DPMRRALLDRLSRGPMSVSHLAEPFDVTLTAI 48


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,227,305
Number of Sequences: 1657284
Number of extensions: 13164265
Number of successful extensions: 24760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24750
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)