Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0836
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48417| Best HMM Match : DUF646 (HMM E-Value=8.6)                    30   1.6  
SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)                  28   8.3  

>SB_48417| Best HMM Match : DUF646 (HMM E-Value=8.6)
          Length = 623

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 673 DTRKRQRGT*CSKKIDFGPTISWDCIPWDVCFYLACHHQ 557
           DTR + RG  C    D GP   + C   DV  + AC H+
Sbjct: 31  DTRDKLRGRRCDANGDVGPIDDFLCAKLDVQEHNACGHE 69


>SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 434 KVSSIVTTAAQSKLITASRQK*AGWRYLAARTHKSSYR 321
           KV  ++    + KL  A +QK  GW Y+ AR  + S +
Sbjct: 86  KVIELINGMQEIKLHNAEKQKRWGWEYIQARLFRVSLK 123


>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 285

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 193 PPSRCQLISKVSPPLFINIYFLLF*AVLR--YF-CNTYTCV*CT 71
           PPS  + +  +SPP   ++YF      ++  YF C+  TC  CT
Sbjct: 45  PPSHARRVLSLSPPYIQDVYFTCHRPHMQDVYFTCHRPTCKTCT 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,199,707
Number of Sequences: 59808
Number of extensions: 423801
Number of successful extensions: 770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)