Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0836
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 355 YRHPAYFCREAVMSFDWAAVVTILETLQLIFQGGWRIYDVDVYRLQ*PLNTS 510
           Y++P    R   +S    +V+  + ++QLI     RI+D  VY ++ P+N S
Sbjct: 193 YQYPRGRTRVEPLSLILISVIMGMASVQLIISSVRRIHDAAVYGIKDPINVS 244


>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 687 LLRSLTLVKGNVELDVQRRSILDRLSRGTVSLGTFASTLPVTISSLFI 544
           +L ++TLV     + + R++I   L+  +VSLGT   +L  T+  +F+
Sbjct: 282 VLSAITLVVTVFNIYLMRKTIQKSLTAISVSLGTVLFSLSTTVIGVFM 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,582
Number of Sequences: 27780
Number of extensions: 315834
Number of successful extensions: 641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)