Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0836
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61630.1 68416.m06907 AP2 domain-containing transcription fac...    31   0.73 
At3g05870.1 68416.m00660 zinc finger (C3HC4-type RING finger) fa...    30   1.7  

>At3g61630.1 68416.m06907 AP2 domain-containing transcription
           factor, putative transcription factor Pti6 -
           Lycopersicon esculentum, PIR:T07728
          Length = 315

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 694 IPSAAIPDTRKRQRGT*CSKKIDFGPTISWDCIPWDVCFYLACHHQLF 551
           I S  +P+T   ++G   ++  +FG    ++  PWDV  +   HH  F
Sbjct: 267 IQSTLLPNTEVSKQGENETEDFEFGLIDDFESSPWDVDHFFDHHHHSF 314


>At3g05870.1 68416.m00660 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 57

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 604 DC-IPWDVC--FYLACHHQLFIYLLLRWVNELTA 512
           DC +P D C   + AC+H   ++ +L+WVN  T+
Sbjct: 9   DCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTS 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,580,785
Number of Sequences: 28952
Number of extensions: 289992
Number of successful extensions: 553
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)