Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0835
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      95   4e-22
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          82   4e-18
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      36   3e-04
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   2.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 95.5 bits (227), Expect = 4e-22
 Identities = 46/96 (47%), Positives = 64/96 (66%)
 Frame = +1

Query: 268 LQAHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 447
           L+AH++VLS CSPYF+E+ K  P +HP++ L+DV+ S L  L++F+Y GEVNV Q  L+S
Sbjct: 43  LKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSS 102

Query: 448 FISTAEQLQVKGLTGXQNEEIPRHPNQSRLRGQAPG 555
           F+ TAE L+V GLT  Q  +       S +R  A G
Sbjct: 103 FLKTAEVLRVSGLT--QQADQTDRDELSHVRALAAG 136



 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLA 254
           M   + F L WNN+ +++++ F  L    D VDVTLA
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLA 37


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 82.2 bits (194), Expect = 4e-18
 Identities = 35/74 (47%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
 Frame = +1

Query: 268 LQAHKLVLSVCSPYFQEMFKMNPTQHPIVFL-KDVSHSALRDLLQFMYQGEVNVKQEELA 444
           L+AHK+VLS CS YFQ++   NP +HP + + +DV  + L+ +++F+Y+GE++V Q EL 
Sbjct: 47  LKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQ 106

Query: 445 SFISTAEQLQVKGL 486
           S + TA+QL++KGL
Sbjct: 107 SLLKTADQLKIKGL 120



 Score = 37.9 bits (84), Expect = 9e-05
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 156 EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLA 254
           + + L WNN+ +NM++ FH LL     VDVTLA
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLA 41


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLA 254
           M   + F L WNN+ +++++ F  L    D VDVTLA
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLA 37


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 391 LLQFMYQGEVNVKQEELASFIS-TAEQLQVKGLTGXQNEEIPR 516
           ++  +Y G VNV+ E + S++    ++  V    G  NE+  R
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEKNTR 85


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 509 ISSF*XPVKPLT*SCSAVLINDANSSCLTLTSP 411
           +SS      P+T + S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 120 VPRRVVAIMASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTL 251
           V R +VA++ +   F +CW  FHA      +   S+    DV +
Sbjct: 283 VIRMLVAVVVA---FFICWAPFHAQRLLAVYAQNSKDKPEDVLI 323


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 121 FHVESSLSWRRTNNFHY 171
           +   +S SWR TNN  Y
Sbjct: 211 YDFRNSRSWRITNNLFY 227


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = -3

Query: 571 CLCCDDL-GPG 542
           C CCD+L GPG
Sbjct: 13  CWCCDNLGGPG 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,359
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)