Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0834
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    28   1.1  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   3.4  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 607 WNVYRTFFVFLVFYTIFLYFCF 672
           W VY T+F     + IFLYF F
Sbjct: 888 WKVYWTYFKACSLFLIFLYFLF 909


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 218 KLYDALTNSIKWCTKLIHSIE*ARKCLLD*NELMHSER 105
           K  D   N IK C   +  +   ++CL D N  MH ++
Sbjct: 85  KSVDREQNRIKECLLFVRQVRDFKECLQDLNRAMHHQQ 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,493
Number of Sequences: 5004
Number of extensions: 39897
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)