Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0834
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665...    31   0.66 
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    29   4.6  
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    28   6.1  

>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
            20766964-20767097,20767205-20767288,20767369-20767659,
            20767867-20768214,20768321-20768496,20768579-20768695,
            20768780-20768936,20769110-20769225,20769323-20769483,
            20769567-20769883,20769969-20770250,20770347-20770648,
            20771977-20772067,20773203-20773256,20773723-20773812
          Length = 1138

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = +1

Query: 535  PFLLFLTFFAIPFIFNQT*----IVY----FTWNVYRTFFVFLVFYTIFLYFCF 672
            P+ +      IP++F QT     IVY    F W   + F+ F V Y  FLYF +
Sbjct: 959  PYAIAQVVMEIPYVFVQTAYYTLIVYAMMSFQWTAAKFFWFFFVSYFSFLYFTY 1012


>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
            6069207-6069291,6069421-6069580,6069667-6069743,
            6069848-6069898,6069979-6070069,6070167-6070468,
            6070549-6070830,6070911-6071388,6071457-6071560,
            6071647-6071809,6071895-6072017,6072099-6072217,
            6072304-6072636,6072713-6073003,6073088-6073171,
            6073260-6073393,6073478-6073705,6073795-6073966,
            6074062-6074316,6074408-6074668
          Length = 1444

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
 Frame = +1

Query: 535  PFLLFLTFFAIPFIFNQT*----IVY----FTWNVYRTF-FVFLVFYTIFLYFCF 672
            P+        IP IF QT     IVY    F W V + F ++F +F+T F+YF F
Sbjct: 1268 PYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFT-FMYFTF 1321


>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
            30208517-30208676,30208768-30208844,30208985-30209032,
            30209504-30209594,30209703-30210004,30210214-30210495,
            30210695-30211011,30211113-30211273,30211556-30211665,
            30211752-30211902,30212438-30212578,30212688-30212857,
            30213485-30213817,30213981-30214271,30214356-30214439,
            30214620-30214753,30214946-30215173,30215273-30215444,
            30215621-30215875,30215963-30216232
          Length = 1509

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = +1

Query: 535  PFLLFLTFFAIPFIFNQT*I----VY----FTWNVYRTFFVFLVFYTIFLYFCF 672
            P+ L      IP++F +T I    VY    F W   + F+ F V +  FLYF +
Sbjct: 1330 PYALAQVVVEIPYVFVETVIYTLIVYPMMSFQWTPAKFFWFFYVSFFTFLYFTY 1383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,238,495
Number of Sequences: 37544
Number of extensions: 201242
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)