Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0834
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    28   5.5  
AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical
           protein C33A11.2 protein.
          Length = 271

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 619 RTFFVFLVFYTIFLYFCFCSAF 684
           RT F + V +TIF   CFC +F
Sbjct: 157 RTVFYYRVIFTIFSVICFCCSF 178


>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 583 QT*IVYFTWNVYRTFFVFLVFYTIFLYF 666
           Q  ++Y  +NVY TFFV       FL F
Sbjct: 176 QNYVIYRDYNVYMTFFVIFKMVATFLVF 203


>AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical
           protein Y104H12D.2 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 639 QKYKKSTVYVPREVYDSRLIKN 574
           Q  +K T++VP + +D++++KN
Sbjct: 112 QNDEKGTIFVPGDAFDAKIVKN 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,576,103
Number of Sequences: 27780
Number of extensions: 216780
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)