Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0833
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15900.1 68418.m01860 expressed protein several hypothetical ...    27   9.0  
At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containi...    27   9.0  
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR...    27   9.0  

>At5g15900.1 68418.m01860 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 426

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 606 YTKTSVC*LIVLQLQAEDVTNHSDYFNEHTYFTYNF 499
           + ++ +C L  ++   +    + DYF   TY TYNF
Sbjct: 149 HMQSLICLLSQVEYPMDASVKNDDYFKRWTYETYNF 184


>At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1117

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 174 YLGVIILRAFSCHYNETNVLLSGD*TFGMSSEELNLV 284
           YL  +I + FS H++ +N L+ G  +FG   E  ++V
Sbjct: 278 YLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVV 314


>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 484 FSNNEFSLSFKHCITINQIVTNCV-HTVTSHLS 389
           F+N E SL F +C  +NQ   + + HT TS  +
Sbjct: 852 FNNPEISLYFPNCFKLNQEARDLIMHTSTSRFA 884


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,845,225
Number of Sequences: 28952
Number of extensions: 265407
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)