Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0832
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    27   3.4  
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    26   5.9  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   7.9  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   7.9  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.9  

>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 381 DVFPARKAAEFDEAGRPHHCLFYTGKPNFFKLLHDAADHLQQLTNMKTKLLERKQLLIQ 557
           D++P +   E+ E     + L  +G  N   +L +  + LQQL   +T  +  ++ ++Q
Sbjct: 84  DIYPMQGGREYLETLVEKYNLHMSGIENLENVLLEQKEQLQQLEKRQTDQVSARENILQ 142


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 610 LKLIFIHPHTTPEL*IAIWIRSCFLSNNLVFIFVS 506
           LK ++ HPH    + I  W+RS     N+ F  VS
Sbjct: 10  LKSLWHHPHNGELISINGWVRSIRKLKNVCFAMVS 44


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 680 LIFPWTTLENCHILNQKSFQLTTAQVDLYSPTYYPRVV 567
           L+   T+ +N HI N  + QLT A V+     YYP +V
Sbjct: 788 LVLHGTSDDNVHIEN--TMQLTKAMVEKGVYNYYPFIV 823


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 255 LANMMGEDPELFTQKDVERAI-EYLFPSGIYDPAARPSM 368
           L  MM E+    T  +    + + LFP G Y P +RP++
Sbjct: 224 LQRMMNEENPFATLPNGPTKVWDLLFPKGPYPPISRPAL 262


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 429 PHHCLFYTGKPNFFKLLH-DAADHLQQLTN 515
           P  CL Y  K   +KLLH +A D L+ +T+
Sbjct: 527 PFLCLIYISKDMEYKLLHGNALDPLEGVTD 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,461
Number of Sequences: 5004
Number of extensions: 59765
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)