Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0832
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1271 + 28883904-28884326,28885556-28886242                       28   8.1  
01_05_0531 - 22988663-22990282                                         28   8.1  

>06_03_1271 + 28883904-28884326,28885556-28886242
          Length = 369

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 255 LANMMGEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDV 386
           L  M+  DP    +  V  A+E+ + S +YDP+A P  + P D+
Sbjct: 296 LQKMLVFDPS--KRISVTEALEHPYMSPLYDPSANPPAQVPIDL 337


>01_05_0531 - 22988663-22990282
          Length = 539

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 677 IFPWTTLENCHILNQKSFQLTTAQVDLYSPTYYPRVV-NCHLDQELL 540
           +F WT + +CH+ N +  +       LY   Y   V+ N H    LL
Sbjct: 116 VFTWTAMVSCHVRNGEPREAVQLFAALYGELYERGVLPNAHTLSSLL 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,201,904
Number of Sequences: 37544
Number of extensions: 370018
Number of successful extensions: 955
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)