Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0832
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.)               59   4e-09
SB_46474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_14746| Best HMM Match : Histone (HMM E-Value=4.4e-32)               29   4.7  
SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.7  
SB_17238| Best HMM Match : Ank (HMM E-Value=1e-09)                     28   8.3  

>SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 25/49 (51%), Positives = 35/49 (71%)
 Frame = +3

Query: 255 LANMMGEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDVFPARK 401
           LA++MGEDPE F +KD++RAIEYL P+ +Y   ARP +  P  +F  R+
Sbjct: 91  LASIMGEDPENFNEKDIQRAIEYLMPTALYAKDARPLLLHPNKLFTKRR 139


>SB_46474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 16  RQIIPAATKYFRYPLTIGTFQYCTRTTSDPSNVLND 123
           + +IP  T +F YP  +  +Q  T+TT+    VL++
Sbjct: 13  KNLIPNTTIWFLYPFDLNEYQNFTKTTTGSGVVLSN 48


>SB_14746| Best HMM Match : Histone (HMM E-Value=4.4e-32)
          Length = 162

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 343 TILPHDHR*GHQKTSFPLAKPLNSTKLED 429
           TI+P D R   QK SFP +   N T+ +D
Sbjct: 119 TIMPKDIRAVDQKASFPASSSRNRTRFQD 147


>SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 191 EQKNMTSL*NDNNLNITSENDTCEYDGRRS 280
           EQK M  L N+ +  +T +  TCE D  RS
Sbjct: 38  EQKEMDGLNNEMDTRVTKDELTCESDSGRS 67


>SB_17238| Best HMM Match : Ank (HMM E-Value=1e-09)
          Length = 495

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 1   RHEGIRQIIPAATKYFRYPLTIGTF 75
           R  G+ +IIP +  +F Y LT+G F
Sbjct: 137 RKVGLNEIIPQSILFFTYILTLGNF 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,911,893
Number of Sequences: 59808
Number of extensions: 431199
Number of successful extensions: 1005
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)