Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0832
         (694 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC057240-1|AAH57240.1|  396|Homo sapiens mitochondrial ribosomal...   116   8e-26
BC047784-1|AAH47784.1|  302|Homo sapiens MRPS9 protein protein.       101   2e-21

>BC057240-1|AAH57240.1|  396|Homo sapiens mitochondrial ribosomal
           protein S9 protein.
          Length = 396

 Score =  116 bits (279), Expect = 8e-26
 Identities = 53/107 (49%), Positives = 74/107 (69%)
 Frame = +3

Query: 246 KTTLANMMGEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDVFPARKAAEFDEAG 425
           K  LANMMGEDPE FTQ+D++RAI YLFPSG+++  ARP M+ PE +FP ++A ++ E G
Sbjct: 85  KRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKRARPVMKHPEQIFPRQRAIQWGEDG 144

Query: 426 RPHHCLFYTGKPNFFKLLHDAADHLQQLTNMKTKLLERKQLLIQMAI 566
           RP H LFYTGK +++ L+HD    L  L   ++  L+ K LL +  +
Sbjct: 145 RPFHYLFYTGKQSYYSLMHDVYGMLLNLEKHQSH-LQAKSLLPEKTV 190



 Score = 42.7 bits (96), Expect = 0.001
 Identities = 20/58 (34%), Positives = 37/58 (63%)
 Frame = +2

Query: 512 KYEDQVIRKKATPDPNGNLQLGGSMWVNKDQLEQLLVEKISDLEYDNFPKWSMERLVS 685
           K++  +  K   P+      + GS W+ K++LE++LVEK+SDL+Y  F +  +E+L++
Sbjct: 174 KHQSHLQAKSLLPEKTVTRDVIGSRWLIKEELEEMLVEKLSDLDYMQFIR-LLEKLLT 230


>BC047784-1|AAH47784.1|  302|Homo sapiens MRPS9 protein protein.
          Length = 302

 Score =  101 bits (242), Expect = 2e-21
 Identities = 45/97 (46%), Positives = 66/97 (68%)
 Frame = +3

Query: 276 DPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDVFPARKAAEFDEAGRPHHCLFYTG 455
           DPE FTQ+D++RAI YLFPSG+++  ARP M+ PE +FP ++A ++ E GRP H LFYTG
Sbjct: 1   DPETFTQEDIDRAIAYLFPSGLFEKRARPVMKHPEQIFPRQRAIQWGEDGRPFHYLFYTG 60

Query: 456 KPNFFKLLHDAADHLQQLTNMKTKLLERKQLLIQMAI 566
           K +++ L+HD    L  L   ++  L+ K LL +  +
Sbjct: 61  KQSYYSLMHDVYGMLLNLEKHQSH-LQAKSLLPEKTV 96



 Score = 42.7 bits (96), Expect = 0.001
 Identities = 20/58 (34%), Positives = 37/58 (63%)
 Frame = +2

Query: 512 KYEDQVIRKKATPDPNGNLQLGGSMWVNKDQLEQLLVEKISDLEYDNFPKWSMERLVS 685
           K++  +  K   P+      + GS W+ K++LE++LVEK+SDL+Y  F +  +E+L++
Sbjct: 80  KHQSHLQAKSLLPEKTVTRDVIGSRWLIKEELEEMLVEKLSDLDYMQFIR-LLEKLLT 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,881,282
Number of Sequences: 237096
Number of extensions: 2063614
Number of successful extensions: 7602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7602
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)