Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0832
         (694 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p pro...   140   1e-33
AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA ...   140   1e-33
AY058508-1|AAL13737.1|  522|Drosophila melanogaster LD21426p pro...    29   7.9  
AE014298-3078|AAF50863.1|  522|Drosophila melanogaster CG1753-PB...    29   7.9  
AE014298-3077|AAF50862.1|  522|Drosophila melanogaster CG1753-PA...    29   7.9  

>AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p
           protein.
          Length = 395

 Score =  140 bits (340), Expect = 1e-33
 Identities = 61/98 (62%), Positives = 76/98 (77%)
 Frame = +3

Query: 246 KTTLANMMGEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDVFPARKAAEFDEAG 425
           K  LANMMG D E FTQ+D++ AI YLFPSG+YD  ARP+M+ PE VFPARKAAEFDE G
Sbjct: 84  KRHLANMMGADAETFTQEDIDEAISYLFPSGLYDQKARPAMKSPEVVFPARKAAEFDETG 143

Query: 426 RPHHCLFYTGKPNFFKLLHDAADHLQQLTNMKTKLLER 539
           RP H +FYTGKPNFF+LLHD  +   +L +++ ++L R
Sbjct: 144 RPFHSMFYTGKPNFFQLLHDIVEETNKLADLEERMLRR 181



 Score = 55.2 bits (127), Expect = 8e-08
 Identities = 26/56 (46%), Positives = 39/56 (69%)
 Frame = +2

Query: 518 EDQVIRKKATPDPNGNLQLGGSMWVNKDQLEQLLVEKISDLEYDNFPKWSMERLVS 685
           E++++R+   PD N  L++ G   + KDQLE LLVE I+D+EY NF   SM+RL++
Sbjct: 175 EERMLRRGNKPDENQKLEIAGFQLLPKDQLELLLVESIADIEYSNFTN-SMDRLIA 229



 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 178 AYLERAKEHDEFMKRQQFEYNIGKRHL 258
           AYL+RA EHDEFMK Q  E+ IGKRHL
Sbjct: 61  AYLKRATEHDEFMKTQHLEFQIGKRHL 87


>AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA
           protein.
          Length = 395

 Score =  140 bits (340), Expect = 1e-33
 Identities = 61/98 (62%), Positives = 76/98 (77%)
 Frame = +3

Query: 246 KTTLANMMGEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDVFPARKAAEFDEAG 425
           K  LANMMG D E FTQ+D++ AI YLFPSG+YD  ARP+M+ PE VFPARKAAEFDE G
Sbjct: 84  KRHLANMMGADAETFTQEDIDEAISYLFPSGLYDQKARPAMKSPEVVFPARKAAEFDETG 143

Query: 426 RPHHCLFYTGKPNFFKLLHDAADHLQQLTNMKTKLLER 539
           RP H +FYTGKPNFF+LLHD  +   +L +++ ++L R
Sbjct: 144 RPFHSMFYTGKPNFFQLLHDIVEETNKLADLEERMLRR 181



 Score = 55.2 bits (127), Expect = 8e-08
 Identities = 26/56 (46%), Positives = 39/56 (69%)
 Frame = +2

Query: 518 EDQVIRKKATPDPNGNLQLGGSMWVNKDQLEQLLVEKISDLEYDNFPKWSMERLVS 685
           E++++R+   PD N  L++ G   + KDQLE LLVE I+D+EY NF   SM+RL++
Sbjct: 175 EERMLRRGNKPDENQKLEIAGFQLLPKDQLELLLVESIADIEYSNFTN-SMDRLIA 229



 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 178 AYLERAKEHDEFMKRQQFEYNIGKRHL 258
           AYL+RA EHDEFMK Q  E+ IGKRHL
Sbjct: 61  AYLKRATEHDEFMKTQHLEFQIGKRHL 87


>AY058508-1|AAL13737.1|  522|Drosophila melanogaster LD21426p
           protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 390 PARKAAEFDEAGRPHHCLFYTGKPNFFKLLHDAADHLQQLT 512
           P  + A+F + G+P  C ++ G       +H    H QQ+T
Sbjct: 6   PYERPADFIDPGKPSKCKWHLGTAEKSPHIHRGIAHRQQIT 46


>AE014298-3078|AAF50863.1|  522|Drosophila melanogaster CG1753-PB,
           isoform B protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 390 PARKAAEFDEAGRPHHCLFYTGKPNFFKLLHDAADHLQQLT 512
           P  + A+F + G+P  C ++ G       +H    H QQ+T
Sbjct: 6   PYERPADFIDPGKPSKCKWHLGTAEKSPHIHRGIAHRQQIT 46


>AE014298-3077|AAF50862.1|  522|Drosophila melanogaster CG1753-PA,
           isoform A protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 390 PARKAAEFDEAGRPHHCLFYTGKPNFFKLLHDAADHLQQLT 512
           P  + A+F + G+P  C ++ G       +H    H QQ+T
Sbjct: 6   PYERPADFIDPGKPSKCKWHLGTAEKSPHIHRGIAHRQQIT 46


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,626,286
Number of Sequences: 53049
Number of extensions: 633709
Number of successful extensions: 1970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1970
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)