Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0832
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    77   2e-14
U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    30   1.8  
AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical ...    30   1.8  
U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like ...    29   3.2  
U50197-3|AAA91256.2|  327|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    27   9.6  

>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 36/77 (46%), Positives = 47/77 (61%)
 Frame = +3

Query: 255 LANMMGEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDVFPARKAAEFDEAGRPH 434
           LA MM  D     Q+ ++RAI YLFPSG+ DP ARP MRPP+++ P  +   FDE G+P 
Sbjct: 63  LAKMMSLDIHELDQEAIDRAILYLFPSGLTDPNARPVMRPPDEILPKFQRFTFDEEGKPE 122

Query: 435 HCLFYTGKPNFFKLLHD 485
              F+T  P  + LL D
Sbjct: 123 GSRFFTLSPKIYGLLSD 139



 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 181 YLERAKEHDEFMKRQQFEYNIGKRHL 258
           YL+ +++H   M++ + E+  G+RHL
Sbjct: 38  YLKHSQQHVAMMEKHRAEFETGRRHL 63


>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 322 YSIARSTSF*VNNSGSSPIIFASVVFRCYIQIVVVS*TRHVLLLSLNKL 176
           Y I  +TS   +    SPI+FA  VF+ ++ +  +S    +L  SL++L
Sbjct: 110 YMITNATSVEASIVDRSPIMFAMSVFKYFLNLPAISLINALLKFSLSEL 158


>AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical
           protein ZK1055.5 protein.
          Length = 369

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +1

Query: 40  KYFRYPLTIGTFQYCTRTTSDPSNVLNDLTDWETLNXXXXXXXXXXAYLERAKEHDEFMK 219
           K + Y LTI T+ + T  +  P+N   + TDW              AY+   ++ D  M 
Sbjct: 90  KKYGYNLTIPTYPFVTVESKFPTNCTWEFTDW-LEQQTRRTDRRPRAYIPDGEQRDYLMN 148

Query: 220 RQQFEYNIGKRHLR 261
           +    YNI   H R
Sbjct: 149 K----YNIVTWHAR 158


>U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical
           protein C15H9.5 protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 252 SFSDVIFKLLSFHKLVMFFCSL*ISFHGLTYLFL 151
           S S+ I+++  F  +++F  +L + FHGL Y FL
Sbjct: 282 SNSENIYRVHKFMAVLVFLKALSVFFHGLNYYFL 315


>AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like
           protein family protein7 protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +2

Query: 497 FTTTYKY---EDQVIRKKATPDPNGN 565
           F  T+ Y   E+ V+R++A+P PNGN
Sbjct: 16  FQVTFTYFWNEEPVVRERASPSPNGN 41


>U50197-3|AAA91256.2|  327|Caenorhabditis elegans Hypothetical
           protein F25E2.3 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 330 PSGIYDPAARPSMRPPEDVFPARKAA 407
           P  I   +  P + PPE + PAR+AA
Sbjct: 141 PDAIKHSSKMPEVTPPEQLLPAREAA 166


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
            protein C28H8.3 protein.
          Length = 1714

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 270  GEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPED 383
            GED     +K  ERA+  L P G+Y P        PED
Sbjct: 993  GEDDGAVHKKAGERAVIPLMPYGVYMPEKLRMFSIPED 1030


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,875,144
Number of Sequences: 27780
Number of extensions: 333166
Number of successful extensions: 842
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)