Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0832
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14720.1 68414.m01760 xyloglucan:xyloglucosyl transferase / x...    28   5.1  
At5g26010.1 68418.m03095 protein phosphatase 2C, putative / PP2C...    28   6.8  
At4g04960.1 68417.m00721 lectin protein kinase, putative similar...    27   8.9  
At1g28040.1 68414.m03433 zinc finger (C3HC4-type RING finger) fa...    27   8.9  
At1g27600.2 68414.m03368 glycosyl transferase family 43 protein ...    27   8.9  
At1g27600.1 68414.m03367 glycosyl transferase family 43 protein ...    27   8.9  
At1g24150.1 68414.m03047 formin homology 2 domain-containing pro...    27   8.9  

>At1g14720.1 68414.m01760 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (XTR2) identical to endoxyloglucan
           transferase [Arabidopsis thaliana] GI:5533311
          Length = 332

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = +1

Query: 187 ERAKEHDEFMKRQQFEYNIGKRHLRI*WAKILNCLLKRM*SAL*NIYSPAVFTILPHDHR 366
           E  +   E  +++   Y+    H+R     +  C++    +    +Y P  F  +PH HR
Sbjct: 258 ESQRNKMEIFRQKHMTYSYCYDHMRY-KVVLSECVVNPAEAKRLRVYDPVTFGGIPHGHR 316

Query: 367 *GHQKTSFPLAK 402
            G  ++   LA+
Sbjct: 317 RGKHRSRSRLAR 328


>At5g26010.1 68418.m03095 protein phosphatase 2C, putative / PP2C,
           putative protein phosphatase-2C, Mesembryanthemum
           crystallinum, AF075579
          Length = 337

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 400 KPLNSTKLEDLTIVCFILENQ 462
           K L  TK++D+T++C  L+N+
Sbjct: 313 KRLKYTKVDDITVICLFLQNK 333


>At4g04960.1 68417.m00721 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 686

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 300 DVERAIEYLFPSGIYDPAARPSMRPPEDVFPARKAAEFD 416
           + ER ++        DPA RPSMR    VF   KA  F+
Sbjct: 591 EAERVLQLGLLCAHPDPAKRPSMRQVVQVFEGDKAEIFE 629


>At1g28040.1 68414.m03433 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 336

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 651 LSYSKSEIFSTNNCSS*SLFTHILPPSCKLPFG 553
           LS S S  F+T+N +    F+ +LPPSC++  G
Sbjct: 125 LSNSTSSFFATSNLT----FSKLLPPSCQIVKG 153


>At1g27600.2 68414.m03368 glycosyl transferase family 43 protein
           similar to Galactosylgalactosylxylosylprotein
           3-beta-glucuronosyltransferase 1, Rattus norvegicus
           [SP|O35789], Homo sapiens [SP|Q9P2W7]; contains Pfam
           domain Glycosyltransferase family 43 [PF03360]
          Length = 394

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 461 WFSSIKQTMVRSSSFVEFSGFASGKDVFWWPHRW 360
           W ++ K   +R    V+ SGFA    + W P RW
Sbjct: 287 WHTNEKSKRLRRFH-VDMSGFAFNSTILWDPKRW 319


>At1g27600.1 68414.m03367 glycosyl transferase family 43 protein
           similar to Galactosylgalactosylxylosylprotein
           3-beta-glucuronosyltransferase 1, Rattus norvegicus
           [SP|O35789], Homo sapiens [SP|Q9P2W7]; contains Pfam
           domain Glycosyltransferase family 43 [PF03360]
          Length = 308

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 461 WFSSIKQTMVRSSSFVEFSGFASGKDVFWWPHRW 360
           W ++ K   +R    V+ SGFA    + W P RW
Sbjct: 201 WHTNEKSKRLRRFH-VDMSGFAFNSTILWDPKRW 233


>At1g24150.1 68414.m03047 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 725

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 288 FTQKDVERAIEYLFPSG-IYDPAARPSMRPPEDVFPARKAAEFD 416
           F+Q D  R IE  FP+  I  P   P + PP++  P+  +++ D
Sbjct: 32  FSQSDSPRNIETFFPNDTITPPVQSPVLSPPQN--PSSSSSDSD 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,952,917
Number of Sequences: 28952
Number of extensions: 305246
Number of successful extensions: 750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)