Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0831
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 31 0.21
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 30 0.36
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.5
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 26 4.5
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.5
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M... 26 5.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.9
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 22 7.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.8
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 25 7.8
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 30.7 bits (66), Expect = 0.21
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Frame = -1
Query: 520 ETRSRCIALRPGRLVLAQRGIPEHQRHCPGGLARPP-YRGDRRRWSSTIASXXRRSG--- 353
E S + + G + + + + ++ CPG PP Y WS + RSG
Sbjct: 270 EDESETVTEKLGDIKINEEVQQKDEQECPGDKVIPPEYAIQEVLWSHVVEVIQSRSGLPL 329
Query: 352 -----VLGVAPQVWL*C*PRQPXYSDRV 284
+L +L C P +P Y+DRV
Sbjct: 330 DCIVSILSSILNFFLRCYPYKPQYADRV 357
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -3
Query: 470 PAGYPGTPA--ALPGRPGKAAVPRRPTS 393
PA +PG PA A+PG PG A P P S
Sbjct: 536 PAPFPGYPAVPAMPGIPGATAPPGAPGS 563
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.5
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Frame = +2
Query: 308 PRSTLQPDLRRHPEDARPTGXRGDSRRPTTSVSAVRRPCQAARAMPLVFRDT-PLGQNQP 484
P ST + P T S PTTS S C + ++P T P+ P
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNS-SPLPTTSTS-----CTTSTSIPPTGNSTTPVTPTVP 306
Query: 485 TGS*SDTPRPGF-SSTVCSATNESVNPHRSSAVADASSRPP-GASGARVT 628
S S T P +ST + T+ S P S++ ++S PP G S VT
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVT 356
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 131 LVGGSAPGPKKKKIYSLSSLGRN 63
LV GS PGP K +Y ++ R+
Sbjct: 232 LVKGSIPGPNKSAVYVTDTINRS 254
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 406 RGTAALPGRPGNAAGVPGYPAGPEPAYR 489
RGT +LP RPG+ V P P R
Sbjct: 117 RGTPSLPSRPGSRPSVLNQEQVPPPPVR 144
>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 155
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -3
Query: 431 RPGKAAVPRR----PTSLVVDYRLXXPSVGRPRGG 339
RPG AVPRR P S V + +G PR G
Sbjct: 51 RPGATAVPRRSPTSPQSAYVPATVYTSPIGSPRRG 85
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 482 PTGS*SDTPRPGFSSTVC-SATNESVNPHRSSAVADASSRPPGAS 613
PT S S TP +ST SA++ + S+ ASS P G S
Sbjct: 530 PTSSVSSTPLSSANSTTATSASSTPLTSVNSTTATSASSTPFGNS 574
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 21.8 bits (44), Expect(2) = 7.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 372 EAIVDDQRRRSPRYGGLARPPGQCRW 449
E +V RR + ++GG A RW
Sbjct: 310 ENLVKQWRREASKFGGFAADVSAERW 335
Score = 21.8 bits (44), Expect(2) = 7.7
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +3
Query: 426 RPPGQCRWCS 455
RP +CRWC+
Sbjct: 367 RPRWRCRWCN 376
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 479 GSGPAGYPGTPAALPGRPG 423
G GP G+ G P G PG
Sbjct: 227 GGGPGGFEGGPGGFGGGPG 245
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 283 KPGQSRXVAAVNTTTRLAAPP--RGRPTDGXSRR*STTND 396
KP S+ A NTT+R PP R R G + TT+D
Sbjct: 445 KPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSD 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,736
Number of Sequences: 5004
Number of extensions: 71713
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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