Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0831
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19180.1 68414.m02387 expressed protein 34 0.10
At5g01280.1 68418.m00037 expressed protein 31 0.95
At3g54350.2 68416.m06007 forkhead-associated domain-containing p... 31 0.95
At3g54350.1 68416.m06006 forkhead-associated domain-containing p... 31 0.95
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical... 30 1.3
At2g28070.1 68415.m03408 ABC transporter family protein 30 1.3
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 30 1.7
At3g51940.1 68416.m05697 expressed protein 30 1.7
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP... 29 2.9
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 29 2.9
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 29 3.8
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 29 3.8
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 29 3.8
At4g29440.1 68417.m04203 expressed protein contains Pfam profil... 29 3.8
At2g19390.1 68415.m02262 expressed protein 28 5.1
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 5.1
At5g49520.1 68418.m06128 WRKY family transcription factor contai... 28 6.7
At5g07600.1 68418.m00871 oleosin / glycine-rich protein 28 6.7
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil... 27 8.9
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 27 8.9
>At1g19180.1 68414.m02387 expressed protein
Length = 253
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 365 GXRGDSRRPTTSVSAVRRPCQAARAMPLV--FRDTPLGQNQPTGS*SDTPRPGFSSTVCS 538
G G+SR+PTT++S PC+A+ +V + T L QP+ S S + P +
Sbjct: 55 GTLGNSRQPTTTMSLF--PCEASNMDSMVQDVKPTNLFPRQPSFSSSSSSLPKEDVLKMT 112
Query: 539 ATNESVNPHRSSA 577
T SV P +A
Sbjct: 113 QTTRSVKPESQTA 125
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 30.7 bits (66), Expect = 0.95
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +2
Query: 380 SRRPTTSVSAVRRPCQAARAMPLVFRDTPLGQNQPTGS*SDTPRPGFSSTVCSATNESVN 559
S ++SVS +RRP ++ + TP +++ TP +ST AT S +
Sbjct: 72 SLHSSSSVSGIRRPSSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATSTTTRATLTSSS 131
Query: 560 PHRSSAVADASSRPPGASGARVTV 631
S+ S G +RVT+
Sbjct: 132 TTSSTRSWSRPSSSSGTGTSRVTL 155
>At3g54350.2 68416.m06007 forkhead-associated domain-containing
protein / FHA domain-containing protein MSP58 -
nucleolar protein, Mus musculus, EMBL:AF015309
Length = 702
Score = 30.7 bits (66), Expect = 0.95
Identities = 26/86 (30%), Positives = 36/86 (41%)
Frame = +1
Query: 340 PPRGRPTDGXSRR*STTNDVGLRGTAALPGRPGNAAGVPGYPAGPEPAYRVVKRYTATGF 519
P G+P+ G R ST+ + L+ T A PG +A + K+ TATG
Sbjct: 401 PEMGQPSKGSKFRASTSTE--LKNTVA-PGGSSSAQACSNTLLSTGTGAKDGKKETATGT 457
Query: 520 LFHSMFGDERKREPASQFRSRRRVVP 597
LF G E S+ + VVP
Sbjct: 458 LFVGSDGHGNHPEKDSENCKEKNVVP 483
>At3g54350.1 68416.m06006 forkhead-associated domain-containing
protein / FHA domain-containing protein MSP58 -
nucleolar protein, Mus musculus, EMBL:AF015309
Length = 702
Score = 30.7 bits (66), Expect = 0.95
Identities = 26/86 (30%), Positives = 36/86 (41%)
Frame = +1
Query: 340 PPRGRPTDGXSRR*STTNDVGLRGTAALPGRPGNAAGVPGYPAGPEPAYRVVKRYTATGF 519
P G+P+ G R ST+ + L+ T A PG +A + K+ TATG
Sbjct: 401 PEMGQPSKGSKFRASTSTE--LKNTVA-PGGSSSAQACSNTLLSTGTGAKDGKKETATGT 457
Query: 520 LFHSMFGDERKREPASQFRSRRRVVP 597
LF G E S+ + VVP
Sbjct: 458 LFVGSDGHGNHPEKDSENCKEKNVVP 483
>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
member of the natural resistance-associated macrophage
protein (NRAMP) metal transporter family, PMID:11500563;
metal transport capacity has not been shown,
PMID:11500563, PMID:1038174
Length = 1294
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/94 (26%), Positives = 39/94 (41%)
Frame = +1
Query: 223 PPTKRLPCTITPTSDLRPGSKPGQSRXVAAVNTTTRLAAPPRGRPTDGXSRR*STTNDVG 402
P +L +TP L+ + ++ +A A P +G+ T + DV
Sbjct: 1174 PAFSKLRTPMTPCFCLQIPASHQRASPTSANGMLPPAAKPAKGKCTTAVTLL-DLIKDVE 1232
Query: 403 LRGTAALPGRPGNAAGVPGYPAGPEPAYRVVKRY 504
+ + GR G AAG +P G E V+KRY
Sbjct: 1233 M-AISCRKGRTGTAAGDVAFPKGKENLASVLKRY 1265
>At2g28070.1 68415.m03408 ABC transporter family protein
Length = 730
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = +2
Query: 380 SRRPTTSVSAVRRPCQAARAMPLVFRDTPLGQNQPTGS*SDTPRPGFSSTVCSATNESVN 559
SR P++ VR+P + P+ F D+P ++ P G ++ AT V+
Sbjct: 23 SRVPSSHFFYVRKP--GSLRQPISFEDSPEWEDTPDVDLRMEDEAGGGDSINDATTTPVS 80
Query: 560 PHRSSAVADASSRPPGASGARVT 628
P S + + + PP G T
Sbjct: 81 PSLSKMNSGSMASPPVPEGGAGT 103
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 491 TR*AGSGPAGYPGTPAALPGRPGKAAVPRRPTSLVVDYRLXXPSVGRP 348
T+ GS PAGY G PG+ G + V R P R+ P + RP
Sbjct: 811 TKNQGSLPAGYGGNVGFRPGQGGNSGVLRNP-------RMQGPIISRP 851
>At3g51940.1 68416.m05697 expressed protein
Length = 453
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 483 GWFWPSGVSRNTSGIARAAWQGRRTAETDVVGRRLSPRXPVGRASSGWRRKS 328
G F P V+ SG+ WQ R +ET + V RAS GW R++
Sbjct: 334 GGFVPDNVAFRESGVNAGGWQTCRGSETKQI------NWDVKRASDGWGRQN 379
>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
epsilon protein kinase [Arabidopsis thaliana]
gi|3549652|emb|CAA12272
Length = 1367
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 476 NQPTGS*SDTPRPGFSSTVCSATNESVNPHRSSAVADASS 595
+QP D RP SS V AT + + HR S A+ +S
Sbjct: 846 HQPDALHPDGDRPRLSSVVADATEDVIQQHRISLSANRTS 885
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 473 GPAGYPGTPAA--LPGRPGKAAVPRRPTS 393
GP +P P + PG PG +PR P S
Sbjct: 191 GPPSFPRNPGSPEFPGNPGAPIIPRNPGS 219
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +1
Query: 289 GQSRXVAAVNTTTRLAAPPRGRPTDGXSRR*STTNDVGLRGTAALPGRPGNAAGVPG 459
G+ + V T + AA P GRP +G S G G GR G G G
Sbjct: 153 GKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGGG 209
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +1
Query: 289 GQSRXVAAVNTTTRLAAPPRGRPTDGXSRR*STTNDVGLRGTAALPGRPGNAAGVPG 459
G+ + V T + AA P GRP +G S G G GR G G G
Sbjct: 89 GKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGGG 145
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +1
Query: 289 GQSRXVAAVNTTTRLAAPPRGRPTDGXSRR*STTNDVGLRGTAALPGRPGNAAGVPG 459
G+ + V T + AA P GRP +G S G G GR G G G
Sbjct: 155 GKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGGG 211
>At4g29440.1 68417.m04203 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 1090
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 209 LGPWSASNTLQILESHKPRAPPRRGD 132
LG S+++T Q+LE KP +PP D
Sbjct: 563 LGKLSSASTSQVLEKEKPSSPPTFDD 588
>At2g19390.1 68415.m02262 expressed protein
Length = 1211
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 232 KRLPCTITPTSDLRPGSKPGQSRXVAAVNTTTRLA 336
+R T PT D GS G+ +AAVN+ +A
Sbjct: 649 QRATATNAPTLDFHVGSNDGREELLAAVNSAINIA 683
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 28.3 bits (60), Expect = 5.1
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Frame = +2
Query: 212 NFRAHPLNDSPALLPRRPISVRGQNPVRVXGLPRSTLQPDLRRHPEDARPTGXRGDS--R 385
N A D PR +S R ++P+ GL PD P RGD+ R
Sbjct: 201 NAAADAEKDGGPRRPRERLSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPR 260
Query: 386 RPTTSVSAVRRPCQAARAMPLVFRDTPLG 472
R S S R P + P +R P G
Sbjct: 261 RRPASPSRGRSP---SSPPPRRYRSPPRG 286
>At5g49520.1 68418.m06128 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 399
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 452 FRDTPLGQNQPTGS*SDTPRPGFSSTVCSATNESVNPHRSSAVADASSRPPG 607
F D PL Q + + + TP S++V S++NE+ N + S + G
Sbjct: 130 FTDLPLPQAESSEVVNTTPTSPNSTSVSSSSNEAANDNNSGKEVTVKDQEEG 181
>At5g07600.1 68418.m00871 oleosin / glycine-rich protein
Length = 230
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 482 AGSGPAGYPGTPAALP-GRPGKAAVPRR 402
AG+GP GTPA P G+ GKA ++
Sbjct: 203 AGAGPGAGAGTPAPAPTGKAGKAGSKKK 230
>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646; supporting cDNA
gi|13160645|dbj|AB036832.1|;
Length = 876
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 186 VGSRPRAQGILGPTH*TTPLHYYPDVRSPSGVKTRSE*XG-CRGQHYNQTCGATPR 350
V + R + I+ P T+P D+ SPS V +E G +G+ +Q+C +PR
Sbjct: 148 VEEKTRKRRIISPGGNTSPKKSKVDL-SPSAVAATTELCGKVKGEVVSQSCAVSPR 202
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187;
contains Pfam profile PF02845: CUE domain
Length = 1973
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 464 GYPGTPAALP-GRPGKAAVPRRPTSLV 387
G GTP +P PG+ AVP PTS +
Sbjct: 748 GVSGTPPCVPIPAPGQPAVPATPTSQI 774
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,419
Number of Sequences: 28952
Number of extensions: 439250
Number of successful extensions: 1286
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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