Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0830
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DAY8 Cluster: Putative membrane protein; n=4; Enterob...    37   0.41 
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    37   0.41 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    37   0.54 
UniRef50_Q9VKJ7 Cluster: Putative gustatory receptor 32a; n=1; D...    36   1.3  
UniRef50_Q08X77 Cluster: Sensor protein; n=1; Stigmatella aurant...    35   1.7  
UniRef50_A6M141 Cluster: Putative uncharacterized protein precur...    35   1.7  
UniRef50_Q7QTY5 Cluster: GLP_169_22321_32229; n=1; Giardia lambl...    33   6.7  
UniRef50_A7IB48 Cluster: DNA-binding protein with PD1-like DNA-b...    33   6.7  

>UniRef50_Q6DAY8 Cluster: Putative membrane protein; n=4;
           Enterobacteriaceae|Rep: Putative membrane protein -
           Erwinia carotovora subsp. atroseptica (Pectobacterium
           atrosepticum)
          Length = 371

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -3

Query: 666 LNNIWYSSLTIFANVYVPLL*NLRLYLFVILAVLH-TLITFNYYSHNPLAALLERFL 499
           + N WYSSLT      +  L  + LY+FV +++LH ++  FN+ +  P    LE+ L
Sbjct: 121 VRNSWYSSLTSIPFFLILALLGVPLYVFVTVSILHYSVQLFNHNAMTPKLGWLEKVL 177


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = -2

Query: 397 LLLT*VYELTAHLMLSGYWSP 335
           LLL  V ELTAHL+LSGYWSP
Sbjct: 155 LLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.7 bits (81), Expect = 0.54
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 213 AGWWYLPVQTHKRSHHQ 163
           A WWYLP +THKRS+H+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q9VKJ7 Cluster: Putative gustatory receptor 32a; n=1;
           Drosophila melanogaster|Rep: Putative gustatory receptor
           32a - Drosophila melanogaster (Fruit fly)
          Length = 461

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -3

Query: 591 YLFVILAVLHTLITFNYYS-HNPLAALLERFLKEISSALYIIFLLLC----TMSSFLCVH 427
           Y F +  V+H L  FN YS   P++A L    +E  +    I LLLC    T++ F+C H
Sbjct: 91  YSFFVRGVVHALTIFNVYSLFTPISAQLFFSYRETDNVNQWIELLLCILTYTLTVFVCAH 150


>UniRef50_Q08X77 Cluster: Sensor protein; n=1; Stigmatella
           aurantiaca DW4/3-1|Rep: Sensor protein - Stigmatella
           aurantiaca DW4/3-1
          Length = 660

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -3

Query: 588 LFVILAVLHTLITFNYYSHNPLAALLERFLKEISSALYIIFLLLCTMSSFLC 433
           LFVI A++ TL+ FN Y H+ L  L   FL++    L     LL      LC
Sbjct: 156 LFVIPALITTLLAFNGYFHDALLLLPPHFLQQTGMGLPASAALLLLCVGLLC 207


>UniRef50_A6M141 Cluster: Putative uncharacterized protein
           precursor; n=1; Clostridium beijerinckii NCIMB 8052|Rep:
           Putative uncharacterized protein precursor - Clostridium
           beijerinckii NCIMB 8052
          Length = 826

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +2

Query: 578 ITNKYNLRFHSNGTYTLANIVKLEYQILLSNTYRYT 685
           + N Y+L+  SN  YT+ NI+KL   I  SN+Y+Y+
Sbjct: 638 LKNLYDLKSTSNPQYTIENIMKLPEDIDESNSYKYS 673


>UniRef50_Q7QTY5 Cluster: GLP_169_22321_32229; n=1; Giardia lamblia
            ATCC 50803|Rep: GLP_169_22321_32229 - Giardia lamblia
            ATCC 50803
          Length = 3302

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -3

Query: 672  VLLNNIWYSSLTIFANVYVPLL*NLRLYLFVILAVLHTLITFNYYSHNPLAALLERFL 499
            ++L+ + +SSL    N YV LL  ++LYL  IL+ L  +    +  + P++  LE  +
Sbjct: 1574 LILDGLTHSSLVTIKNAYVKLLLFMKLYLSHILSTLTIVFAVLFQLYIPVSHELEHII 1631


>UniRef50_A7IB48 Cluster: DNA-binding protein with PD1-like
           DNA-binding motif; n=1; Candidatus Methanoregula boonei
           6A8|Rep: DNA-binding protein with PD1-like DNA-binding
           motif - Methanoregula boonei (strain 6A8)
          Length = 193

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +1

Query: 127 FINDKVIQTFNLLVVGPLVSLNG*VPPPRLFLP*SSNAFRLEGGAAVVTILRP*NLYPKA 306
           FINDK +QT  L+ +G L        P  L +P   +    EGG  +V I     +YP  
Sbjct: 29  FINDKEVQTGTLIFLGALRQGRMVTGPETLAIPPEPHYVMFEGGWEMVGI---GTIYPGE 85

Query: 307 SG-AFTL*MSMGSSNHLTSGGL 369
            G A     S+G + H  +G L
Sbjct: 86  DGPAIHYHASVGRAGHALTGCL 107


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,393,162
Number of Sequences: 1657284
Number of extensions: 12468413
Number of successful extensions: 25092
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25042
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)