Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0830
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.6  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    25   7.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.8  
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    25   7.8  

>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 693 ILFVYLYVLLNNIWYSSLTIFANVYVPLL*NLRLYLFVILAVL 565
           IL   LYV     W  SL +F NV +P    +R  +  IL ++
Sbjct: 30  ILSTILYVSAVISWNVSLKVFGNVLLPGFLTIRTVVIFILRIV 72


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 294 ISQGEWRIYVVNVYGLQ*PLNIRWAVSSYTYVSNNF 401
           IS+ E  IY++  YGL   + + +AV  + Y S  +
Sbjct: 186 ISESENSIYILGFYGLVFGIVLPYAVGKWWYGSRTY 221


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 563  CRTAKITNKYNLRFHSNGTYTLANIVKLEYQILLSNTYRYT 685
            C T + T    L  HS G + L  IV    QIL +++Y+ T
Sbjct: 1917 CDTYEATRLQKLLLHSIGGWPLYTIVLAIGQILGASSYQLT 1957


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 549 FNYYSHNPLAALLERFLKEISSALYII 469
           FN++ H P+ + + R+  EI   L ++
Sbjct: 121 FNFFHHEPVVSAVTRYRNEIKRVLGVL 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,994
Number of Sequences: 5004
Number of extensions: 54461
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)