Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0830
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 33   0.17 
SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   2.7  
SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)           29   3.6  
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)                     28   6.3  

>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/77 (20%), Positives = 38/77 (49%)
 Frame = -3

Query: 660 NIWYSSLTIFANVYVPLL*NLRLYLFVILAVLHTLITFNYYSHNPLAALLERFLKEISSA 481
           ++++   TIF +V +P++      ++ +L   H  I  +  S       L R+ K +   
Sbjct: 185 HVYHPVTTIFVSVCLPVVIFCYYKIYKVLKYHHLKINQSVPSEEGKVVNLLRYKKSVIGL 244

Query: 480 LYIIFLLLCTMSSFLCV 430
           +Y++ +++  ++ F CV
Sbjct: 245 IYVLVMMIVLLAPFACV 261


>SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1176

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -3

Query: 588 LFVILAVLHTLITFNYYSHNPLAALLERFLKEISSALYIIFLLLCTMS 445
           + +++A+  T++    Y+H PL++    F K +S  ++   L  C  S
Sbjct: 716 VIIMIAITITVVLIISYNHKPLSSSSSTFAKRVSPLVFSPVLFPCNSS 763


>SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)
          Length = 341

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
 Frame = -3

Query: 693 ILFVYLYVLLNNIWYSSLTIFANVYVPLL*NLRLYLFVIL---AVLHTLITFNYY---SH 532
           I F+ +Y LL       L +  +     L    LYLFV L   A+  TL  F +    + 
Sbjct: 46  ICFISIYTLLFFFILVQLCLILHYKHRRLSYQSLYLFVCLLWAAIRTTLFAFYFNDCDTA 105

Query: 531 NPLAALLERFLKEISSALYIIFLLLCTMSSFL 436
           N L A    FL  +   +Y+ FL+LC ++ F+
Sbjct: 106 NSLTAFPSWFLYALP--IYLQFLMLCLLTLFM 135


>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 687  FVYLYVLLNNIWYSSLTIFANVYVPLL*NLRLYLFVILAV 568
            F +L V L+ + Y+ + IFAN ++ ++  L L+LFV   V
Sbjct: 1219 FSFLVVGLDIVVYTIVPIFANYWLAIVVILPLFLFVYYGV 1258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,449,860
Number of Sequences: 59808
Number of extensions: 398837
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)