Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0830
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80024-2|AAK18892.1|  327|Caenorhabditis elegans Serpentine rece...    30   1.8  
AF016688-4|AAB66075.2|  481|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z81508-4|CAB04139.1|  371|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U80024-2|AAK18892.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein125 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 354 NIRWAVSSYTYVSNNFISLFYLFIY 428
           N++W    + Y+S N++S F  F+Y
Sbjct: 130 NLKWKKIRFVYISLNYLSAFLFFVY 154


>AF016688-4|AAB66075.2|  481|Caenorhabditis elegans Hypothetical
           protein F18A12.3 protein.
          Length = 481

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +2

Query: 422 YLCTHKKEDIVQSNRKIMYKALLISLR--NLSSRAARGL*E**LKVMSVCRTAKI-TNKY 592
           Y    KK  IV+ N  I    +L  +R  N S   A       +  +S   T KI TNK+
Sbjct: 250 YSMLEKKLKIVKENETISLNLILPDVRSVNFSGLIAEMSHPSRVSKLSGMITPKIITNKH 309

Query: 593 NLRFHSNGTYTLANIVKLEYQILLSN 670
            L F +NGT +L  I++      L+N
Sbjct: 310 PLLFETNGTESLDAIIESTSNRTLAN 335


>Z81508-4|CAB04139.1|  371|Caenorhabditis elegans Hypothetical
           protein F20E11.6 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/18 (44%), Positives = 17/18 (94%)
 Frame = -3

Query: 588 LFVILAVLHTLITFNYYS 535
           +F++L +LH+LI++++YS
Sbjct: 140 VFILLLILHSLISYSFYS 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,403,245
Number of Sequences: 27780
Number of extensions: 307973
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)