Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0830
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15940.1 68418.m01864 short-chain dehydrogenase/reductase (SD...    28   6.8  
At1g27340.1 68414.m03330 F-box family protein contains Pfam PF00...    28   6.8  

>At5g15940.1 68418.m01864 short-chain dehydrogenase/reductase (SDR)
           family protein similar to forever young oxidoreductase
           GI:18138083 from [Lycopersicon esculentum]
          Length = 346

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -1

Query: 482 PCT*FSYYSVLCLLFCVYXXXXXXXXXXXIAYIGV*AHSPPDVKW-LLEPIDIYNVNAPL 306
           PC     YS LCLL   Y            +++ V A  P  VK  ++  +  Y + + +
Sbjct: 212 PCARIYEYSKLCLLLFSYELHRQLRLIDDSSHVSVIAADPGFVKTNIMRELPCY-ITSMV 270

Query: 305 ALGYKF*GL 279
            LG+K  GL
Sbjct: 271 FLGFKILGL 279


>At1g27340.1 68414.m03330 F-box family protein contains Pfam
           PF00646: F-box domain; similar to fim protein; similar
           to ESTs gb|T42445, gb|T76780, gb|AA650733, and
           emb|Z17748
          Length = 467

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 678 LYVLLNNIWYSSLTIFANVYVPLL*NLRLYLFVILAVLHTLIT 550
           +Y  L+N+W    TI +N+ +P+L N +     I + L+ ++T
Sbjct: 277 VYDSLSNVWTKRGTIPSNIKLPVLLNFKSQPVAIHSTLYFMLT 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,131,881
Number of Sequences: 28952
Number of extensions: 274355
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)