Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0829
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.27
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.5
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.5
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.4
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.4
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 27 3.4
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 26 4.4
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 4.4
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 5.9
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.8
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 7.8
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 7.8
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 7.8
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 7.8
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 7.8
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +3
Query: 273 PAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 437
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 41 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 220
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 221 TEKTQKSLFD 250
+KS+ D
Sbjct: 82 NITNKKSVTD 91
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 307 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 426
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 331 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 462
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 225 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 94
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 262 TSRTVE*RLLGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 128
TS+ ++ G ++G +S +LFIGVD G+ F LQ
Sbjct: 377 TSQVID--FFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -2
Query: 123 VATLGRSFREGVSLTEQAIVNQYIFDEEGDRRFVHSATLVP 1
V GR R + + + A+ + DE+G+ ++ + T++P
Sbjct: 357 VLAWGRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIP 397
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 280 KHTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETCEKNPLPTKDVIE 447
+H E+ E P+ ++ + EKEK+ + +E+ P H T +K+P+ +
Sbjct: 801 RHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEKPKKLR 860
Query: 448 QEKSA 462
+++ A
Sbjct: 861 KDRYA 865
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +1
Query: 256 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTK 435
+ FD +K +EK L + AE EK++ N +E+ + + N K
Sbjct: 74 KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMVAN--ARK 131
Query: 436 DVIEQEK 456
+ + EK
Sbjct: 132 ETVASEK 138
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 340 KEKNKFLNGIENFDPTKLKHTETCEKN 420
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 234 WVFSVATSSADGSTIFSLVSTSRRQL 157
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 234 WVFSVATSSADGSTIFSLVSTSRRQL 157
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 234 WVFSVATSSADGSTIFSLVSTSRRQL 157
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 234 WVFSVATSSADGSTIFSLVSTSRRQL 157
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 237 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 139
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,866
Number of Sequences: 5004
Number of extensions: 57608
Number of successful extensions: 224
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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