Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0829
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 2.0
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 3.5
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 3.5
03_06_0246 + 32622793-32622804,32622883-32623057,32623395-326236... 29 4.6
05_01_0501 - 4184932-4185048,4185360-4185456,4185537-4185709,418... 28 6.0
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301... 28 8.0
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 8.0
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 8.0
01_06_0241 - 27813076-27813622,27813695-27814125 28 8.0
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 125 DLKSQLEGFNTSCLRDVDTNEKIVL 199
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 132 RVSSKASTPAVSVTSTPMKRLCFR 203
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 87 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 179
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>03_06_0246 +
32622793-32622804,32622883-32623057,32623395-32623659,
32624594-32624693,32625076-32625125,32625239-32625293,
32625742-32625774
Length = 229
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 470 LLYNSYSQMYLASSPYFNIDVSQIDLRRPLQVLFLFLYNGQHCLGQWATYSNPGFYFKFP 649
L+Y + S Y + ++ VSQ L +P F++NG H L +W + G P
Sbjct: 156 LVYENLSNPYGIAGTLLHVQVSQSYLPKPK-----FIFNGGHELWEWRSICGCGHMDSQP 210
Query: 650 -NDKSRLTANK 679
ND + T K
Sbjct: 211 LNDTTTRTEVK 221
>05_01_0501 -
4184932-4185048,4185360-4185456,4185537-4185709,
4186225-4186305,4186959-4187072,4187177-4187497
Length = 300
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/58 (36%), Positives = 24/58 (41%)
Frame = -1
Query: 430 WGAGSSRTFPCASA*WDRSSRCRSGICSFPSPLR*HLCPEAGSSPESRCASAGSNQTS 257
W A SS P A A R R+ P P R L A SS S A++ SN S
Sbjct: 3 WAALSSPPAPAAPAAVWMGRRARTARLPSPGPRRVVLAAAASSSSPSPDANSSSNSNS 60
>08_02_1512 +
27627740-27629009,27629111-27629256,27629842-27630101,
27630346-27630412,27630511-27630545,27630818-27631587,
27631633-27631793
Length = 902
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 241 FIRRYEKFDSSQLKHTETQEKNP---LPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETC 411
F +E F+S H + P P + + A +E + + +E+ + K+ + +
Sbjct: 260 FFNPFESFESYY--HQDQPSPAPPAYTPSRSSNGAREEDDNGIPEVEHDEVDKVDNHQDA 317
Query: 412 EKNPLPTKDVIEQE 453
PLP KDV E++
Sbjct: 318 NGMPLPAKDVSEEQ 331
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 101 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 193
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 101 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 193
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 270 EPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVREEPAPHK 434
EP H + ++ R +R+ ++ + HR RS H A + V + H+
Sbjct: 23 EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,449,904
Number of Sequences: 37544
Number of extensions: 409795
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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