Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0829
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 74 1e-13
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 37 0.013
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 31 0.66
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 30 1.5
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 30 1.5
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.0
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 30 2.0
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 29 2.7
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05) 29 4.7
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 6.2
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_9325| Best HMM Match : Exo_endo_phos (HMM E-Value=0.081) 28 8.1
SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 73.7 bits (173), Expect = 1e-13
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +1
Query: 232 PEVF--IRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 405
PEV + FD+S+LKH E QEKNPLP KD I E + + ++ FD +KLKH +
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQ 731
Query: 406 TCEKNPLPTKDVIEQEKSA 462
T EKNPLP I QEK++
Sbjct: 732 TEEKNPLPDAKTIAQEKAS 750
Score = 70.5 bits (165), Expect = 1e-12
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +1
Query: 232 PEVFIRRYE--KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 405
PEV R E KFD+S+LKH ET+EK +P KD IEAE ++ +++FD +KLKH
Sbjct: 522 PEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSR--AEVKSFDHSKLKHVV 579
Query: 406 TCEKNPLPTKDVIEQE 453
T EKNPLPT + +E
Sbjct: 580 TQEKNPLPTPQTLHEE 595
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Frame = +1
Query: 259 KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFDPTKLKHTETCEKNPLPT 432
KFD++ LKH +T+EKN LP + I+ E + ++F + E +F+ +KL+H ET EKN LPT
Sbjct: 416 KFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPT 475
Query: 433 KDVIEQEK 456
KD I EK
Sbjct: 476 KDTIADEK 483
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/76 (50%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +1
Query: 232 PEVFIRRYE--KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 405
P+ F R E F+ S+L+H ET+EKN LP KD I EK F +G+E F KLKH E
Sbjct: 445 PDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVE 503
Query: 406 TCEKNPLPTKDVIEQE 453
T EKNPLP I E
Sbjct: 504 TLEKNPLPDAQNIRAE 519
Score = 68.1 bits (159), Expect = 6e-12
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +1
Query: 256 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKF--LNGIENFDPTKLKHTETCEKNPLP 429
+ FD S+LKH ET EKNPLP ++ E ++ + +FD +KLKH E EKNPLP
Sbjct: 644 KSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLP 703
Query: 430 TKDVIEQEKS 459
TKD I E +
Sbjct: 704 TKDDITTEST 713
Score = 60.9 bits (141), Expect = 9e-10
Identities = 28/64 (43%), Positives = 45/64 (70%)
Frame = +1
Query: 262 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 441
FD ++LKH TQEK+ +P ++ I+ E ++ +++FD +KLKH ET EKNPLP+ V
Sbjct: 610 FDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAV 667
Query: 442 IEQE 453
+++E
Sbjct: 668 LKEE 671
Score = 58.8 bits (136), Expect = 4e-09
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +1
Query: 256 EKFDSSQLKHTETQEKNPLPDKDAIEAEK-EKNK-FLNGIENFDPTKLKHTETCEKNPLP 429
+ FD S+LKH TQEKNPLP + E KNK + + +FD TKLKH T EK+ +P
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMP 627
Query: 430 TKDVIEQE 453
+++ I++E
Sbjct: 628 SQEDIKEE 635
Score = 35.1 bits (77), Expect = 0.054
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 367 IENFDPTKLKHTETCEKNPLPTKDVIEQE 453
+ FD LKH +T EKN LP+ + I+QE
Sbjct: 414 VAKFDAANLKHVQTKEKNTLPSDETIKQE 442
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +2
Query: 107 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 226
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 107 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 226
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 95 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFDGTR 259
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+ ++
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFENSK 388
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +1
Query: 262 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 441
+D Q K E PD+D +E E+E NG+E+ D K + PT DV
Sbjct: 839 YDVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDV 895
Query: 442 IEQE 453
Q+
Sbjct: 896 ETQQ 899
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 474 FITVTRKCISLVRRILILM*VRSICVVHYKFYFCFCTMGNTAWGNGRRTATP 629
F T +SL R ++ +R IC VH FY+C C + A G A P
Sbjct: 39 FRLATHVILSLESRDTLVAVLR-ICSVHLDFYYCTCVWSSMAGVPGSLMADP 89
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 300 EEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEP 422
EEP+ + +G KE+ E RE R H + V+EEP
Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEP 880
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -1
Query: 232 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGS 89
GLL+GD+F R K N+ I VD T G + FEL + + E+ GS
Sbjct: 74 GLLAGDIFRRPKANILISVDGV-TKG-DKFELPAKASFPVQEMAGLGS 119
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 77 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 223
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = -1
Query: 232 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFEL 137
GLL+GD+F R K N+ I VD T G + FEL
Sbjct: 51 GLLAGDIFRRPKANILISVDGV-TKG-DKFEL 80
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 220 H*EDPEVFIRRYEKFDSSQLKHTETQEKNPLPDKDAIEA 336
H +P+ + +E FDS LKH ++ N +P+ + +
Sbjct: 370 HEHEPKQDLYHHEDFDSYSLKHERVKQSNTVPNPSKVRS 408
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 25 ESSIPFLIKNILIHNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 159
E S+PF N N ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 280 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEK 417
+HTE + +P P K I+ E +++ + I+ KH+ +CE+
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257
>SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 259 KFDSSQLKHTETQEKNPLPDKDAIEAEK-----EKNKFLNGIENFDPTKLKHTETCEKNP 423
K+ SSQ+ ET++ K ++E+ EK N +N + TK +H++ EKN
Sbjct: 166 KYSSSQIDKLETKQAIKSKKKKRRKSEEKELLGEKVDQFNSKKNLNRTKERHSKKMEKNR 225
Query: 424 LPTKDVIEQEK 456
Q+K
Sbjct: 226 QDNSKTRSQQK 236
>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
Length = 492
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 227 SQWRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 111
S WRRLQ+ A S + + D +L A+ G W PW
Sbjct: 419 SLWRRLQELNATSLEYRLQPEDPRSIAL-AERLGRWEPW 456
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 98 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 226
L DL +V +LKS+ EG CL D++ + DV E
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKE 1166
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Frame = +3
Query: 165 SVTSTPMKRLCFRLLKTSPLRRPRSLY-----STVREV*FEPAEAHRDSGEEPASGQRCY 329
SVT T +RL R S L PRS+ T+ + A R GEE G+ Y
Sbjct: 438 SVTGTFARRLVSRTTDASSLEDPRSVVVTSSPRTLGRISNGTTSARRVEGEEHVCGE--Y 495
Query: 330 RSGEGKEQIPERH 368
+ KE +P H
Sbjct: 496 KCSLCKEVVPPDH 508
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Frame = +1
Query: 232 PEVFIRRYEKFDSSQL--KHTETQEKNPL---PDKDAIEAEKEK-NKFLN--GIENFDPT 387
PE +Y+ FD ++ +TQEK PL DK+ EA + N+ + I N P
Sbjct: 366 PEAKQGKYD-FDPTETPASRDKTQEKQPLEKTKDKEKEEANRRSYNRMASYESIGNIGPE 424
Query: 388 KLKHTETCE 414
K K ++CE
Sbjct: 425 KSKSAKSCE 433
>SB_9325| Best HMM Match : Exo_endo_phos (HMM E-Value=0.081)
Length = 249
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 207 LKTSPLRRPRSLYSTVREV*FEPAEAHRDSGEE 305
L+ P+R PRS+ STV V + P A D ++
Sbjct: 129 LQLRPIRLPRSVSSTVLGVIYHPPHAKADDNQK 161
>SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +1
Query: 226 EDPEVFIRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENF 378
EDP+ IRRYE S + E+ K L +A E +E +FL E F
Sbjct: 109 EDPDYVIRRYE---SGRYASDESVRKEYLKVDEAKEELQEVVEFLRNPEKF 156
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,104,595
Number of Sequences: 59808
Number of extensions: 462904
Number of successful extensions: 1408
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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