Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0829
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    57   1e-08
AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear recep...    29   3.1  
AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear horm...    29   3.1  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    28   5.4  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   5.4  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    27   9.5  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 30/72 (41%), Positives = 41/72 (56%)
 Frame = +1

Query: 244 IRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNP 423
           I   E FDS++L  T  +EK  LP  D I+ EK+  +  + I NF    LK TET EKN 
Sbjct: 51  IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110

Query: 424 LPTKDVIEQEKS 459
           LP+   + +EK+
Sbjct: 111 LPSPTDVAREKT 122



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/61 (47%), Positives = 39/61 (63%)
 Frame = +1

Query: 274 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 453
           +LK  ET EKN LP K+ +  EK+  + ++ IE+FD TKL  T   EK  LP+ D I+QE
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 454 K 456
           K
Sbjct: 83  K 83



 Score = 35.1 bits (77), Expect = 0.047
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 137 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFD 250
           ++E F+++ L      EKIVLPSA+D+  EK    L D
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTD 90



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 92  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 232
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 95  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEK 229
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEK 45


>AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear receptor
           NHR-126 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 612 AHCPRQCCPLYKNKNKTC 559
           AHCPR  C  ++NKN  C
Sbjct: 46  AHCPRGNCASFENKNLNC 63


>AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 126 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 612 AHCPRQCCPLYKNKNKTC 559
           AHCPR  C  ++NKN  C
Sbjct: 46  AHCPRGNCASFENKNLNC 63


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 280 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 381
           KHTET+++ P  +K    A+K  N  L  +E  N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 30  FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 209
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P ++      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 210 KTSPLRR 230
             +P+++
Sbjct: 76  TVTPIQQ 82


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 336 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 473
           G+ + Q P+  +  RS   +  G++   P P      A EI L+HY
Sbjct: 320 GQNQPQQPQYQQHPRSQSVDPSGDMNGGPRPIHQNFSASEIELHHY 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,425,219
Number of Sequences: 27780
Number of extensions: 336121
Number of successful extensions: 1204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)