Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0829
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 32 0.41
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 31 0.72
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 0.95
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 30 1.7
At1g51900.1 68414.m05850 hypothetical protein 30 1.7
At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger) fa... 29 2.2
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 2.9
At3g28770.1 68416.m03591 expressed protein 29 2.9
At1g23230.1 68414.m02906 expressed protein 29 3.8
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 5.0
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 28 5.0
At3g57780.1 68416.m06436 expressed protein 28 5.0
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 28 5.0
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 6.7
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 28 6.7
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 8.8
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ... 27 8.8
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 8.8
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 31.9 bits (69), Expect = 0.41
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Frame = +3
Query: 15 LSARIFYPLPHQKYIDSQWPAP*VTLPP*KT----SPRSPQT*RVSSKASTPAVSVTSTP 182
++ R+ P P + + S PA + PP + SP ++ +P+ S S P
Sbjct: 456 VAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESPSPSSLSPP 515
Query: 183 MKRLCFRLLKTSPLRRPRSLYSTVREV*FEPAEAHRDSGEEPASGQRCYRSGEGKEQIPE 362
++ ++L + P+RR RSL V H G G GK
Sbjct: 516 GRK---KVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSMSPVRGRGKSSPSS 572
Query: 363 RHRELRS 383
RH++ RS
Sbjct: 573 RHQKARS 579
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +1
Query: 280 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 453
K +E P P+ + + EK+ FLNG K KNP+P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 274 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQ 450
Q+K + +E+N K+ +E + + K +E + +LK T E+N ++ IE
Sbjct: 778 QIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKLREAIEL 837
Query: 451 EKSAXXXXXXXXXANVSR 504
E+ A + R
Sbjct: 838 EEKEKRLIEAFERAEIER 855
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNPLPT 432
+K + +LK T +E+N ++AIE E+++ + + E + +LK E+ +
Sbjct: 811 QKENERRLKETREKEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEEMRMRL 870
Query: 433 KDVIEQEK 456
++ E+E+
Sbjct: 871 QEAKERER 878
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 65 TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 235
T S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E
Sbjct: 74 TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133
Query: 236 KS 241
S
Sbjct: 134 SS 135
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 229 DPEVFIRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTET 408
DP+++IR YE+ + K + T + + + D+IE K + L+ I LK +
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEG--VKCRMLDEIMKKSGHHLKISRP 419
Query: 409 CEKNPLPTKDVIEQEK 456
E P K V E+E+
Sbjct: 420 -EYKPEIEKQVYEEEE 434
>At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 210
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 226 EDPEVFIRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 405
++ E+ YE FDS+ E + L D+++ +E++ FL + DP +L + E
Sbjct: 62 DEEEINENYYEYFDSNGFGVDEDEINEFLEDQESNSNLEEEDDFLEEEDEIDPDQLSYEE 121
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 286 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 381
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 244 IRRYEKFDSSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKN 420
+R E+ K +E EK + KDA E + NK L+ EN D K + E +++
Sbjct: 768 VRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKED 827
Query: 421 PLPTKD 438
+KD
Sbjct: 828 KEESKD 833
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 436 PLWGAGSSRTFPCASA*WDRSSRC-RSGICSFPSP 335
PL+G + + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 229 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 110
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +2
Query: 8 RVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 187
R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569
Query: 188 KIVLPSAEDVATEK 229
AED A E+
Sbjct: 570 ----LDAEDRAAER 579
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 265 DSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCE 414
DSS+ TE +E N L D E EKE++K L+ I + + ETCE
Sbjct: 72 DSSE--KTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPETCE 120
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +3
Query: 294 SGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 473
S E+ A R + + K + ER + SH ++ ++R EP H RE+ Y
Sbjct: 489 SAEQKAQEIRAAAASDFKTMLREREISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEY 548
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +1
Query: 274 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 453
QL+ T+ + K P E +K K D K ++ E C P+P + ++E
Sbjct: 413 QLEETDVKRKRNAPGPSPKEPAMKKQK-----SEMDCDKEENAEDCFGEPVPERFIVEMR 467
Query: 454 KS 459
+S
Sbjct: 468 RS 469
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 235 EVFIRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 381
E +R ++ ++ K T K + +KDA EA KE+ NG+ N D
Sbjct: 45 EFLSKRKQEHEAKSSKRTRPASK--VIEKDASEASKEETPSENGMNNGD 91
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +1
Query: 274 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 453
QL+ T+ + K P E +K I D K ++ E C P+P + ++E
Sbjct: 359 QLEETDVKRKRNAPGPSPKEPAMKKQ-----ISEMDCDKEENAEDCFGEPVPERFIVEMR 413
Query: 454 KS 459
+S
Sbjct: 414 RS 415
>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 766
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 593 HCLGQWATYSNPGFYFKFPNDKSRLTAN 676
HCL ++Y PGF FK+ + K + N
Sbjct: 694 HCLFGSSSYMKPGFRFKYYSSKVEVRRN 721
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 232 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 107
GL G++ + +++ +T +AGV A L +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,774
Number of Sequences: 28952
Number of extensions: 316064
Number of successful extensions: 980
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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