Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0828
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228...    30   1.6  
03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477     29   5.0  
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853...    28   8.7  

>08_01_1084 -
           11120719-11120950,11121035-11121133,11122446-11122849,
           11123559-11124197
          Length = 457

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 361 VGHPEQPRVSYRCFIISQVNFMDILLSHFNLLYHRPIP 248
           V HP  P+  Y C    ++  MD+   +FN++Y    P
Sbjct: 205 VSHPATPQKIYSCCYEGEICLMDLEKENFNMIYLTDYP 242


>03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477
          Length = 486

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 443 KIYFRCKLDPTIIVMMKTDDENGMLFIIRYSPATNFDHHNHI*LPYSL 586
           K YFR +++ TI  ++     +   F++  +P ++F H  ++ L Y L
Sbjct: 181 KAYFRPEVNETIAELLSFLANHSSPFMVELNPFSSFQHKKNLSLDYYL 228


>07_01_1006 +
           8528508-8529285,8529376-8529544,8530179-8530445,
           8530533-8530878,8530964-8531101,8531197-8531322,
           8531422-8531634,8531721-8531863,8531891-8532009,
           8532099-8532295,8532379-8532729,8532811-8533395
          Length = 1143

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 372 LNRKLDIQSSRVSPTGASLSLR*ILWTFYYH 280
           L+RK+ I SSR++P    + +R ++  F++H
Sbjct: 324 LSRKVPISSSRINPYRMIIIIRLVVLGFFFH 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,156,848
Number of Sequences: 37544
Number of extensions: 363729
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)