Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0828
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)             29   5.1  
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_41821| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7)             28   6.7  
SB_21134| Best HMM Match : PAN (HMM E-Value=0.0002)                    28   8.9  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)
          Length = 288

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 692 QRYTPPFNAFTASTARNRPGW 630
           Q++  P N F A T ++RPGW
Sbjct: 31  QKHNMPTNWFLAETGKSRPGW 51


>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 710 RSPV*LQRYTP-PFNAFTASTARNRPGW*YLPARTHKTSYHNTDCTA 573
           RS V + R  P P +A  A  ARN   W     R +++SY+ TD TA
Sbjct: 23  RSTVMILRLGPKPLSATKARDARNEHFWVGFNDRANESSYNWTDGTA 69


>SB_41821| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7)
          Length = 616

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 455 RCKLDPTIIVMMKTDDENGMLFIIRYSPATNFDHHN 562
           +   D T     K  D++G  + +RY P T  D+HN
Sbjct: 416 QASFDQTAPPYQKALDDSGYNYTLRYEPNTIIDNHN 451


>SB_21134| Best HMM Match : PAN (HMM E-Value=0.0002)
          Length = 518

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 695 LQRYTPPFNAFTASTARNRPGW*YLPARTHKTSYHNTDCTAVKCGCDGR 549
           L   +PP  A  ++T+ N   +        +T  HN  CT V CGC  R
Sbjct: 287 LSALSPP-KAIPSATSENLIKFLISRDNGVRTVVHNGSCTRVDCGCPTR 334


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 622 RYYHPGLFLAVEAVNALKGGVYRCN 696
           R+Y  G  L +  VN    G YRCN
Sbjct: 910 RFYSNGTHLMITNVNRTDSGAYRCN 934


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,205,685
Number of Sequences: 59808
Number of extensions: 416586
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)