Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0828
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.97 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.97 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 637 GLFLAVEAVNALKGGVYRCN 696
           G  LA+EAV     G+YRC+
Sbjct: 292 GSVLALEAVTLEDNGIYRCS 311


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 637 GLFLAVEAVNALKGGVYRCN 696
           G  LA+EAV     G+YRC+
Sbjct: 292 GSVLALEAVTLEDNGIYRCS 311


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 338 CLLQVLHYLSGKFYGH 291
           C+L++ H + G+FYG+
Sbjct: 117 CMLELGHEVCGRFYGN 132


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -3

Query: 714 PKVSSIVTTVYPTLQRIYCFHGQK*ARVVVPTRADSQDVLPQHRLY 577
           P   +I TT+Y     +     ++ +++  PT A+S  +  + R+Y
Sbjct: 630 PAAFNISTTIYENQNCLDASSSRRGSKIGSPTPAESTFIPEERRIY 675


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 543 LTSTITTTFN-CRTVCVVVGRLVSPRG*VLPPW 638
           L + I  TF+ C TV V+     SP+  V+ PW
Sbjct: 308 LFTMILDTFSICVTVVVLNVHFRSPQTHVMAPW 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,980
Number of Sequences: 438
Number of extensions: 4531
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)