Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0828
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta...    30   1.4  
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat...    29   3.2  
At3g20610.1 68416.m02608 non-race specific disease resistance pr...    27   9.6  

>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
           domain-containing protein contains similarity to S-locus
           protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
           profile PF00226 DnaJ domain
          Length = 695

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 620 PARTHKTSYH-NTDCTAVKCGCDGRS*WRAN 531
           PA THK S+H N + TA K G  G S  + N
Sbjct: 605 PANTHKPSFHVNMNATAAKRGTSGSSGQKGN 635


>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
           bHLH127 transcription factor
          Length = 880

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 319 IISQVNFMDILLSHFNLLYHRPIPRVLKFN 230
           +I  ++F D L+S  + L+H P+ R L FN
Sbjct: 841 VIFPLHFQDSLISTMDSLFHPPLKRTLCFN 870


>At3g20610.1 68416.m02608 non-race specific disease resistance
           protein, putative similar to non-race specific disease
           resistance protein NDR1 [Arabidopsis thaliana]
           gi|2754816|gb|AAB95208
          Length = 222

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 157 CFTILCVILNWVFKL 113
           CF+I+CV++NW+  L
Sbjct: 205 CFSIICVLMNWLIFL 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,820,731
Number of Sequences: 28952
Number of extensions: 296677
Number of successful extensions: 517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)