Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0827
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   3.3  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    26   3.3  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   4.4  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    25   5.8  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 98  LERAFRFHWTQNRRSRFRFLKIYFLDWQHL 9
           L +  + HW + +++R  F K+ F  W +L
Sbjct: 881 LSKEDKKHWLKYKKNRSTFAKLLFSTWSNL 910


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 LDSLKRKMEPESPSNITGTSF 314
           LDS +   + E P N+TGT+F
Sbjct: 177 LDSSQDSFQEEHPGNVTGTTF 197


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +1

Query: 331 FRKLSEFRFRFTFQQTG---G*GTCIIVLPHPYTKPDINCFLEVCKVLRKKFEVSIKFYN 501
           F K+ +   RF    TG        I+   H Y+   + CF+   ++ R+K    ++ Y+
Sbjct: 290 FAKIVDLFLRFFLSWTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITRRKV---LQMYD 346

Query: 502 GYLIFKPESIADSYNRI 552
               FKP S   + NRI
Sbjct: 347 DSPGFKP-SYYTNLNRI 362


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 227 LLRGIRPYSGQFET*NGTGEPLEYNW 304
           +L G+R + GQ E  +   E + YNW
Sbjct: 560 VLAGLRVFDGQVEKLHSVLEEIGYNW 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,193
Number of Sequences: 5004
Number of extensions: 42108
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)