Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0827
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330...    31   0.63 
01_06_0435 - 29321167-29322018,29323986-29324030,29325978-293261...    29   1.9  
06_03_1223 - 28526869-28527192,28527515-28527634,28527742-285278...    28   5.9  
11_06_0098 - 20068488-20068616,20069039-20069257,20069431-200696...    27   7.7  
06_01_0409 + 2926072-2926275,2926423-2926484,2926598-2926638,292...    27   7.7  

>12_01_0418 -
           3304741-3304904,3305579-3305762,3307254-3307347,
           3308530-3308882,3309140-3309274,3309354-3309392,
           3309587-3309652,3309739-3309834,3310291-3310527,
           3310602-3310722,3310854-3310889,3313062-3313159,
           3313298-3313591,3313842-3313904,3314280-3314438,
           3314557-3314655
          Length = 745

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 315 RNLCQLYSRGSPVPFYVSNCPEYGRIPRNNRICGILL 205
           + +  L    S +P+++ +C E+ R P+ N  CG  L
Sbjct: 568 KRITDLDGTESDIPWWIVDCVEHNRFPKENTKCGFYL 604


>01_06_0435 -
           29321167-29322018,29323986-29324030,29325978-29326103,
           29326941-29327003,29327578-29327970
          Length = 492

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 344 LSFLNPCLASETCASYIRGALRFHFTFQTVQNMVEFLVIIEFAAFYLATXITLP 183
           L  + PC+ SE  A +       HF F  V+N  E LV +  +  +      LP
Sbjct: 410 LGAMEPCMGSEDFAVFSEAVPASHFYFVGVRNEAEGLVHLAHSPHFRVDDAALP 463


>06_03_1223 -
           28526869-28527192,28527515-28527634,28527742-28527816,
           28527905-28527964,28528271-28528370,28528664-28529148,
           28529243-28529437,28529532-28529762,28529851-28529967,
           28530247-28530330,28530755-28530893,28530939-28531090
          Length = 693

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 183 GQRNGSRQVKCRKFDYYEEFDHILDSLKRKMEPE 284
           G+R+GSR+V+ R+  Y  E +  +  L+R++E E
Sbjct: 105 GKRDGSRRVRMRR--YRSELEQEVKKLQRQLEEE 136


>11_06_0098 -
           20068488-20068616,20069039-20069257,20069431-20069606,
           20069812-20070034
          Length = 248

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 107 ARQLERAFRFHWTQNRRSRFRFLKIYFLDWQH 12
           A+  +RA   H T+  ++RF  LK Y++ W++
Sbjct: 177 AKYFQRANLRHSTRQIKNRFTHLKNYYIAWRY 208


>06_01_0409 +
           2926072-2926275,2926423-2926484,2926598-2926638,
           2927165-2927394
          Length = 178

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 324 FGVRNLCQLYSRGSPVPFYVSNC 256
           F  RN  +LY+ GSPV     NC
Sbjct: 143 FSTRNFAELYNLGSPVATVYFNC 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,393,093
Number of Sequences: 37544
Number of extensions: 245335
Number of successful extensions: 500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)