Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0827
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36313| Best HMM Match : Crl (HMM E-Value=5.1)                       27   7.9  
SB_8166| Best HMM Match : DUF729 (HMM E-Value=1.6)                     27   7.9  
SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27)                 27   7.9  
SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_36313| Best HMM Match : Crl (HMM E-Value=5.1)
          Length = 442

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 344 LSFLNPCLASETCASYIRGALRFHFTFQTVQNMVE 240
           +S  NP  A  T  S IRG LRFH  F T + + E
Sbjct: 394 VSLTNPAFA--TLPSVIRGFLRFHVYFTTRRILYE 426


>SB_8166| Best HMM Match : DUF729 (HMM E-Value=1.6)
          Length = 327

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 344 LSFLNPCLASETCASYIRGALRFHFTFQTVQNMVE 240
           +S  NP  A  T  S IRG LRFH  F T + + E
Sbjct: 279 VSLTNPAFA--TLPSVIRGFLRFHVYFTTRRILYE 311


>SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27)
          Length = 309

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 348 FTQFPESLFGVRNLCQLYSRGSPVPFYVSNCPE 250
           F +FPE+L G+ +L  L  RG+ +     NC E
Sbjct: 218 FEEFPENLIGLVSLECLSLRGNCIKSLADNCVE 250


>SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 344 LSFLNPCLASETCASYIRGALRFHFTFQTVQNMVE 240
           +S  NP  A  T  S IRG LRFH  F T + + E
Sbjct: 381 VSLTNPAFA--TLPSVIRGFLRFHVYFTTRRILYE 413


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,073
Number of Sequences: 59808
Number of extensions: 286505
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)