Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0827
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    28   5.3  
AC006830-6|AAK68608.1|  186|Caenorhabditis elegans Hypothetical ...    27   7.0  

>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
           protein R193.2 protein.
          Length = 1853

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 3   GHEVLPVEKIDFEESKSRSPILSPVKSECSFEL 101
           G+ ++  +  DF+E++S SPI S +KS+  F L
Sbjct: 333 GNIIVVGDGFDFDEAQSASPIASALKSQYFFSL 365


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 92  RAFRFHWTQNRRSRFRFLKIYFLDWQHL 9
           RA  FH  Q+ RSRF FL IYF+   H+
Sbjct: 24  RALCFH--QHCRSRFSFLHIYFVSSLHI 49


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -2

Query: 404 TIIQVPYPPVC--WNVNLNRNS 345
           T + VPYPPV   W   LNRNS
Sbjct: 801 TPVDVPYPPVAEGWLAALNRNS 822


>AC006830-6|AAK68608.1|  186|Caenorhabditis elegans Hypothetical
           protein ZK105.1 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 350 NSLSFLNPCLASETCASYIRGALRFHFTFQTVQNMVEFL--VIIEFA 216
           N  +F++ C +  TC S IR      +  ++V+N  EF+  V ++FA
Sbjct: 65  NMKNFVSACNSLHTCFSNIRCDKNKEYMLKSVENYCEFVAYVHVDFA 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,881,967
Number of Sequences: 27780
Number of extensions: 228008
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)