Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0827
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00890.1 68417.m00120 proline-rich family protein contains pr...    28   3.7  
At5g15540.1 68418.m01819 expressed protein low similarity to DNA...    27   6.5  
At1g02290.1 68414.m00171 expressed protein                             27   8.6  

>At4g00890.1 68417.m00120 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 431

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 15  LPVEKIDFEESKSRSPILSPVKSE 86
           LP + ID  E++S+SP +SP KS+
Sbjct: 230 LPSKSIDENETRSQSPPISPPKSD 253


>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
           repair and meiosis protein Rad9 [Coprinus cinereus]
           GI:1353390, SP|Q09725 Sister chromatid cohesion protein
           mis4 {Schizosaccharomyces pombe}
          Length = 1755

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -2

Query: 344 LSFLNPC--LASETCASYIRGALRFHFTFQTVQNMVEFLVIIEFAAFYLATXITLPQY 177
           + +L  C   A+ETC  +    L   FT    Q+  E  +IIE     L T + LP+Y
Sbjct: 510 VGYLTKCHEAATETCCLFWTRVLE-RFTSFKGQDASEIKLIIENLVMDLLTALNLPEY 566


>At1g02290.1 68414.m00171 expressed protein
          Length = 443

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 427 PDINCFLE-VCKVLRKKFEVSIKFYNGYLI 513
           P + CF E V  V R+K+  S+KFY+  LI
Sbjct: 114 PKVACFKEGVMFVKRRKYYYSLKFYHEKLI 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,192,769
Number of Sequences: 28952
Number of extensions: 210704
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)