Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0826
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   0.41 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.3  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.2  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.9  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   8.9  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   8.9  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   8.9  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 228 WNGITSLKGGEKSLRRGILSWKD 296
           WN I+SL  G +  R   LSW D
Sbjct: 378 WNSISSLSHGGQLARFKCLSWLD 400


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +1

Query: 55  CYKTFYSKNCKHSKV---NNSCEHG 120
           C + FY KNC+ S     +N C++G
Sbjct: 364 CPEGFYGKNCEFSGYDCDSNPCQNG 388


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 358 CHSVLSCKS 332
           CH VLSCKS
Sbjct: 140 CHRVLSCKS 148


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = -3

Query: 226 YVGRHRFGRNIWYW 185
           YV   +    IWYW
Sbjct: 19  YVSSRKSDSGIWYW 32


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 304 PREFPFKPPSIYMITPNGSSRQT 372
           P EFP    S  + +PN +SR +
Sbjct: 216 PAEFPTTSSSSALESPNPASRSS 238


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 304 PREFPFKPPSIYMITPNGSSRQT 372
           P EFP    S  + +PN +SR +
Sbjct: 5   PAEFPTTSSSSALESPNPASRSS 27


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 304 PREFPFKPPSIYMITPNGSSRQT 372
           P EFP    S  + +PN +SR +
Sbjct: 5   PAEFPTTSSSSALESPNPASRSS 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,319
Number of Sequences: 336
Number of extensions: 3099
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)