Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0826
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 76 4e-15
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 40 3e-04
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 37 0.002
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 37 0.002
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 36 0.003
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 35 0.007
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 35 0.007
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 32 0.061
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 31 0.080
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 30 0.19
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 28 0.99
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.3
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 26 4.0
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 25 5.3
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 25 5.3
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.3
SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ... 25 5.3
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 7.0
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 9.2
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 25 9.2
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 75.8 bits (178), Expect = 4e-15
Identities = 32/55 (58%), Positives = 40/55 (72%)
Frame = +3
Query: 357 QFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTPTLGSIETSRYQKR 521
+F+TNTRLCLS +DFHP +WNP+W +STIL GL+SFM T G I TS +R
Sbjct: 79 RFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEITTGGIVTSESTRR 133
Score = 58.8 bits (136), Expect = 5e-10
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMITPNG 357
+PYEGG YHG +IFP ++PFKPP+I MITP+G
Sbjct: 47 TPYEGGQYHGTLIFPPDYPFKPPAIRMITPSG 78
Score = 52.8 bits (121), Expect = 3e-08
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +2
Query: 137 GATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGRRKVPTKG 277
GA RL ++YL L+ +PV V A+P NILEWHY++ G P +G
Sbjct: 5 GAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEG 51
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 39.5 bits (88), Expect = 3e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +1
Query: 256 EKSPYEGGYYHGKIIFPREFPFKPPSIYMIT----PNGSSRQTHDCASVLQ 396
E +PYEGGY+ I P ++PF+PP + T PN SS+ C +L+
Sbjct: 44 EGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILK 94
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 36.7 bits (81), Expect = 0.002
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 256 EKSPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
E + YEGG++H + FP+++P PP + T
Sbjct: 46 EDTLYEGGFFHATLSFPQDYPLMPPKMKFTT 76
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
SPY GG + I FP ++PFKPP + T
Sbjct: 43 SPYAGGVFFLSIHFPTDYPFKPPKVNFTT 71
Score = 27.9 bits (59), Expect = 0.99
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 366 TNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 482
+N +CL I D W+PA +IS +L + S + + P
Sbjct: 80 SNGSICLDILR---DQWSPALTISKVLLSICSLLTDPNP 115
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 36.3 bits (80), Expect = 0.003
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 256 EKSPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
++S YEGG +H ++ P E+P PP++ +T
Sbjct: 42 QQSAYEGGKFHLELFLPDEYPMMPPNVRFLT 72
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 35.1 bits (77), Expect = 0.007
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +3
Query: 240 TSLKGGEKSLRRGILSWKDYFPKGISVQTTFDLHDNTEWQFKTNTRLCLSITDFHPDTWN 419
T +GG+ L + P + QT +H N W TN +C+ I H W+
Sbjct: 47 TPYEGGQWVLDIHVHEGYPISPPSVYFQTKI-VHPNISW---TNGEVCMDILKTH---WS 99
Query: 420 PAWSISTILTGLLSFM 467
PAWS+ + ++S +
Sbjct: 100 PAWSLQSACLAIISLL 115
Score = 32.3 bits (70), Expect = 0.046
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSIY----MITPNGSSRQTHDCASVLQT 399
++PYEGG + I +P PPS+Y ++ PN S C +L+T
Sbjct: 46 ETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKT 96
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 35.1 bits (77), Expect = 0.007
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMIT----PNGSSRQTHDCASVLQ 396
S Y GG +H + FP ++PF+PP+I T PN S + + C ++L+
Sbjct: 49 SVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDS-EGNVCLAILK 96
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.9 bits (69), Expect = 0.061
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSI 336
+P+EGG Y + FP ++P PP++
Sbjct: 48 TPFEGGLYPATLKFPSDYPLGPPTL 72
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 31.5 bits (68), Expect = 0.080
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSIYMITP 351
K+ +EGG Y + FP E+P +PP P
Sbjct: 50 KTSWEGGLYKLTMAFPEEYPTRPPKCRFTPP 80
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 30.3 bits (65), Expect = 0.19
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSI 336
++PY GG + + P E+P+K PSI
Sbjct: 41 ETPYSGGIWKVHVELPSEYPWKSPSI 66
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 27.9 bits (59), Expect = 0.99
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 268 YEGGYYHGKIIFPREFPFKPPSIYMITP 351
YEG + + FP +P+ PP+I +P
Sbjct: 73 YEGLKFKISMSFPANYPYSPPTIIFTSP 100
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 404 MKVCNTEAQSCVCLELPFGVIM*IEGGLNGNSLGKIIFP**YPPS 270
+K+ + C +L I+ + LN NSL KI+F Y PS
Sbjct: 970 LKIISISQGDTACGDLVVDAILDTQNDLNPNSLEKILFEQTYGPS 1014
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/69 (21%), Positives = 36/69 (52%)
Frame = +2
Query: 53 FAIKHFTRRTVNTQKLTIHVNMAKTKVTGATSRLKQDYLRLKNDPVPYVTAEPVPSNILE 232
++I+ F+ ++ + +N + K++ A L+ +RL+ +P + + +E
Sbjct: 261 YSIEGFSSKSASDSFFVRRLNGEEQKISVAEYFLENHNVRLQYPNLPCILVKNGAMLPIE 320
Query: 233 WHYVVKGRR 259
+ +VVKG+R
Sbjct: 321 FCFVVKGQR 329
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 369 NTRLCLSITDFHPDTWNPAWSISTILTGLLSFM 467
N LCL I + W+P + ++ ILT + S +
Sbjct: 84 NGELCLDILQ---NRWSPTYDVAAILTSIQSLL 113
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+P+E G + + F ++P KPP + ++
Sbjct: 46 TPFEDGTFKLVLSFDEQYPNKPPLVKFVS 74
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 413 LEPCLVYFYDPYRSVEFYVGEDS 481
L P L YFY Y+S+E ++ D+
Sbjct: 120 LVPDLTYFYKQYKSIEPWLQNDN 142
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 173 LKNDPVPYVTAEPVPSNILEWHYVVKGRRKVPTKGDIIMERLF 301
+ +P ++ E VPS IL ++ + ++P K I+E F
Sbjct: 66 IAENPYQSLSLESVPSKILFGSFLFYVKDRIPEKAGYIIEEQF 108
>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 372 CLS*TAIRCYHVNRRWFERK 313
CLS A+RC VNR F RK
Sbjct: 4 CLSKPALRCRSVNRLQFLRK 23
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 307 REFPFKPPSIYMITPNGSS 363
+ FPF+PP+ TP+ SS
Sbjct: 99 KNFPFRPPTRLTSTPSNSS 117
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +3
Query: 294 DYFPKGISVQTTFDLH-DNTE 353
+Y+P+ +S+Q + D+H NTE
Sbjct: 106 EYYPRSVSMQQSQDVHFQNTE 126
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 286 DNIPLRRDFSPPFNDVMPFQYVGRHRF 206
DN+ L DF P F D + F +G R+
Sbjct: 727 DNVQLGNDFRPKF-DSVSFSRIGSSRY 752
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,603
Number of Sequences: 5004
Number of extensions: 50640
Number of successful extensions: 153
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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