Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0826
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 5e-07
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017) 44 1e-04
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 36 0.027
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 35 0.036
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 34 0.063
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.063
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.063
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 33 0.11
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 33 0.11
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 33 0.15
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 33 0.15
SB_12325| Best HMM Match : Arf (HMM E-Value=8.4) 29 1.8
SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9) 29 3.1
SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8) 28 4.1
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12) 27 7.2
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 27 9.6
SB_17271| Best HMM Match : Ank (HMM E-Value=1.7e-10) 27 9.6
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 51.2 bits (117), Expect = 5e-07
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +1
Query: 268 YEGGYYHGKIIFPREFPFKPPSIYMITPNG 357
+ GG YHG+II P E+P KPPSI ++TPNG
Sbjct: 53 FAGGRYHGRIILPPEYPMKPPSIMLLTPNG 82
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +3
Query: 357 QFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEK-TPTLGSIETSRYQKRCL 527
+F+ ++CLS++ HP+TW P+WSI T+L ++ FM K +G+++ + ++ L
Sbjct: 83 RFEIGKKICLSMSAHHPETWQPSWSIRTVLMAIIGFMPTKGAGAIGALDYTPKERAVL 140
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 140 ATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKG 253
A RL ++ L+N Y A+P+ N+ EWH+ V+G
Sbjct: 11 AVKRLMREAKELRNATELY-HAQPLEDNLFEWHFTVRG 47
>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
Length = 123
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +1
Query: 268 YEGGYYHGKIIFPREFPFKPPSIYMIT 348
+ GG YHG+II P E+P KPPSI ++T
Sbjct: 18 FAGGRYHGRIILPPEYPMKPPSIMLLT 44
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 35.5 bits (78), Expect = 0.027
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 268 YEGGYYHGKIIFPREFPFKPPSIYMIT 348
YE GY+ ++FP+E+P +PP++ I+
Sbjct: 377 YEEGYFKASMVFPKEYPQRPPTLTFIS 403
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 256 EKSPYEGGYYHGKIIFPREFPFKPPSI 336
E PY G + +I FP E+PFKPP I
Sbjct: 33 EMPPYNKGAFRIEICFPAEYPFKPPKI 59
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 35.1 bits (77), Expect = 0.036
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 253 AEKSPYEGGYYHGKIIFPREFPFKPPSIYMITP 351
AE +PY G + I P +PF+PP + +TP
Sbjct: 5 AEGTPYHKGIFKLDIQIPERYPFEPPKVRFVTP 37
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 34.3 bits (75), Expect = 0.063
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSI 336
S YEGG + I FP ++PFKPP +
Sbjct: 64 SVYEGGVFFLDIHFPTDYPFKPPKV 88
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 34.3 bits (75), Expect = 0.063
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+PYEGG + ++ P ++PFK PSI T
Sbjct: 60 TPYEGGVWKVRVDLPEKYPFKSPSIANFT 88
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 34.3 bits (75), Expect = 0.063
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+PYEGG+++ I P ++P +PP + ++T
Sbjct: 23 TPYEGGFFYFLIRCPPDYPIRPPRVKLMT 51
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 33.5 bits (73), Expect = 0.11
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 268 YEGGYYHGKIIFPREFPFKPPSIYMIT 348
Y GGY+ + FP ++P+ PP+ +T
Sbjct: 1169 YAGGYFKAHMSFPHDYPYSPPTFRFLT 1195
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 33.5 bits (73), Expect = 0.11
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPP 330
++P+EGG Y+ I+ P +PF PP
Sbjct: 698 ETPFEGGTYNLDIVIPETYPFNPP 721
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPP 330
S YEGG + I FP ++PFKPP
Sbjct: 177 SVYEGGVFFLDIHFPSDYPFKPP 199
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 119 AKTKVTGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKG 253
AK + T A R++++ + DP P +A P ++ EW+ + G
Sbjct: 130 AKNQSTAA-KRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILG 173
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPP 330
S YEGG + I FP ++PFKPP
Sbjct: 137 SVYEGGVFFLDIHFPSDYPFKPP 159
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 333 DLHDNTEWQFKT-NTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLE---KTPTLGSIE 500
D+H +++ FK +CL I D+W+PA +IS +L + S + + P +GSI
Sbjct: 147 DIHFPSDYPFKPPKGMVCLDILK---DSWSPALTISKVLLSICSLLTDCNPADPLVGSIA 203
Query: 501 TSRYQKR 521
Q R
Sbjct: 204 ALYVQNR 210
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 119 AKTKVTGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKG 253
AK + T A R++++ + DP P +A P ++ EW+ + G
Sbjct: 90 AKNQSTAA-KRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILG 133
>SB_12325| Best HMM Match : Arf (HMM E-Value=8.4)
Length = 154
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 350 RMAVQDKHTIVPQYYRLSSGHLEPCL--VYFYDPYRSVEFYVGEDSY 484
R AV HT+VP+ + L++ CL V F +P VE Y G+D++
Sbjct: 104 RDAVWWLHTVVPKMFNLTAKEYNACLQKVLFLEP---VENYSGKDNW 147
>SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9)
Length = 748
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 230 EWHYVVKGRRKVPTKGDIIMER-LFSQGNFRSNHLRFT**HRMAVQDKHTIVPQYYRLSS 406
EW+YV + R K+ +G +R L+ RS+ H A++ K TI P +
Sbjct: 678 EWYYVNQVRAKIAVRGSSYDQRFLYYASTTRSSRSGIR-LHTFAIKGKPTISPGLASFQN 736
Query: 407 GHLEPCLVYFYDP 445
H Y+Y P
Sbjct: 737 WHF-----YYYHP 744
>SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8)
Length = 55
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMITP-NGSSR 366
+PY G + I FP +P PP + +IT NG+ R
Sbjct: 18 TPYSRGCFVFDIFFPGTYPNVPPLVKLITTGNGTVR 53
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 295 IIFPREFPFKPPSIYMITPNGSSRQT 372
++ P E P PP Y TPNGS+ T
Sbjct: 1703 LVLPNEKPPLPPPAYPRTPNGSAVTT 1728
>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
Length = 446
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 77 RTVNTQKLTIHVNMAKTKVTGATSRLKQDYLRLKNDPVPYVTAEPVPSNI 226
R + +KL +H N T G D L ++N+P + ++PVP +
Sbjct: 158 RCIKLRKLILHSNRLFTLPEGIHFLTNLDELDVRNNPELEMPSKPVPDEL 207
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+PY+ G + I+ P +P PPS + ++
Sbjct: 646 TPYDHGLFAFDILLPANYPDAPPSFHYLS 674
>SB_17271| Best HMM Match : Ank (HMM E-Value=1.7e-10)
Length = 548
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +2
Query: 353 MAVQDKHTIVPQYYRLSSGHLEPCLVYFYDPYRSVEFYVGEDSYIGVH 496
+A++D + P Y+ GHL+ CL++ + V D H
Sbjct: 32 IAIKDNNGATPLYFAAQEGHLD-CLIWLAKRSATTHSQVSVDGMTAAH 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,584,375
Number of Sequences: 59808
Number of extensions: 387539
Number of successful extensions: 957
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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