Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0826
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   5.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/45 (17%), Positives = 24/45 (53%)
 Frame = +2

Query: 26  EMKTFCM*SFAIKHFTRRTVNTQKLTIHVNMAKTKVTGATSRLKQ 160
           +M  +C+   ++   +R    +Q + IH++ +  ++   + R+K+
Sbjct: 534 KMPRYCLFGDSVNTASRMEATSQAMQIHISQSTKELLSPSYRVKE 578


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 274 LRRDFSPPFNDVMPFQYVGRHRFGRNIWY 188
           L RDF  PF +++ F+    +   R  +Y
Sbjct: 430 LNRDFRKPFREILYFRCSNLNHMMREEFY 458


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 291 KDYFPKGISVQTTFDLHDNTE 353
           K  F  G+ +   FD +DN +
Sbjct: 163 KSLFENGVEIGINFDKYDNIQ 183


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 295 SFHDNIPLRRDFSPPFNDVMPFQYV 221
           SF  +  L  DF P FN     QY+
Sbjct: 364 SFGMDFSLNEDFYPTFNQTNVDQYL 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,339
Number of Sequences: 438
Number of extensions: 3473
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)