Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0826
(528 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative ... 81 3e-16
At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ... 81 6e-16
At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative ... 62 3e-10
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 40 0.001
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 40 0.001
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 37 0.010
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 37 0.010
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 37 0.010
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ... 36 0.013
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 36 0.017
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 36 0.022
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 36 0.022
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 36 0.022
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 36 0.022
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 36 0.022
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 36 0.022
At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)... 36 0.022
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 35 0.029
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 35 0.029
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 35 0.029
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 35 0.029
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 35 0.029
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 34 0.068
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 33 0.12
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 33 0.12
At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative ... 33 0.12
At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)... 33 0.16
At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative ... 33 0.16
At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative ... 33 0.16
At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative ... 33 0.16
At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative ... 33 0.16
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 32 0.27
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ... 31 0.36
At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)... 31 0.36
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E... 31 0.48
At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative ... 31 0.48
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)... 31 0.48
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 31 0.48
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 31 0.63
At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family pro... 30 1.1
At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E... 30 1.1
At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)... 29 1.9
At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E... 29 2.6
At4g03000.2 68417.m00408 expressed protein contains similarity t... 29 2.6
At4g03000.1 68417.m00407 expressed protein contains similarity t... 29 2.6
At3g12090.1 68416.m01505 senescence-associated family protein si... 29 2.6
At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E... 28 3.4
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si... 28 4.5
At4g28250.1 68417.m04047 beta-expansin, putative (EXPB3) similar... 27 5.9
At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative ... 27 5.9
At1g56030.1 68414.m06433 MIF4G domain-containing protein / U-box... 27 5.9
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)... 27 5.9
At5g54880.1 68418.m06836 DTW domain-containing protein contains ... 27 7.8
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 27 7.8
At1g16840.4 68414.m02027 expressed protein 27 7.8
At1g16840.3 68414.m02026 expressed protein 27 7.8
At1g16840.2 68414.m02028 expressed protein 27 7.8
At1g16840.1 68414.m02025 expressed protein 27 7.8
>At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 243
Score = 81.4 bits (192), Expect = 3e-16
Identities = 32/57 (56%), Positives = 47/57 (82%)
Frame = +3
Query: 357 QFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTPTLGSIETSRYQKRCL 527
+F T ++CLS++DFHP++WNP WS+S+ILTGLLSFM++ +PT GS+ TS +K+ L
Sbjct: 79 RFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTSVAEKQRL 135
Score = 55.6 bits (128), Expect = 2e-08
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +1
Query: 253 AEKSPYEGGYYHGKIIFPREFPFKPPSIYMITPNG 357
+E +P+ GG+Y+GKI FP E+P+KPP I M TPNG
Sbjct: 44 SEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTPNG 78
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +2
Query: 149 RLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGRRKVPTKG 277
RL+++Y L +PV +V A P P++ILEWHYV++G P G
Sbjct: 9 RLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAG 51
>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 237
Score = 80.6 bits (190), Expect = 6e-16
Identities = 31/57 (54%), Positives = 47/57 (82%)
Frame = +3
Query: 357 QFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTPTLGSIETSRYQKRCL 527
+F T ++CLS++DFHP++WNP WS+S+ILTGLLSFM++ +PT GS+ T+ +K+ L
Sbjct: 79 RFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVIEKQRL 135
Score = 55.6 bits (128), Expect = 2e-08
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +1
Query: 253 AEKSPYEGGYYHGKIIFPREFPFKPPSIYMITPNG 357
+E +P+ GG+Y+GKI FP E+P+KPP I M TPNG
Sbjct: 44 SEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTPNG 78
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +2
Query: 149 RLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGRRKVPTKG 277
RL+++Y L +PV +V A P P++ILEWHYV++G P G
Sbjct: 9 RLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAG 51
>At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative
similar to Non-Canonical UBiquitin Conjugating Enzyme 1
(NCUBE1) from [Gallus gallus] GI:7362937, [Mus musculus]
GI:7363050, [Homo sapiens] GI:7362973; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 309
Score = 61.7 bits (143), Expect = 3e-10
Identities = 24/58 (41%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Frame = +3
Query: 357 QFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFM-LEKTPTLGSIETSRYQKRCL 527
+F+TNT++CLSI+++HP+ W P+WS+ T L L++FM LGS++ + ++R L
Sbjct: 85 RFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPNGALGSVDYPKDERRTL 142
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 268 YEGGYYHGKIIFPREFPFKPPSIYMITPNGS-SRQTHDCASV 390
+EGG YHG+I P ++PFKPPS ++TPNG T C S+
Sbjct: 55 FEGGIYHGRIQLPADYPFKPPSFMLLTPNGRFETNTKICLSI 96
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 39.5 bits (88), Expect = 0.001
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+PYEGG + IIFP ++PFKPP + T
Sbjct: 78 TPYEGGIFFLDIIFPSDYPFKPPKLVFKT 106
Score = 35.5 bits (78), Expect = 0.022
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 116 MAKTKVTGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGRRKVPTKGDI 283
+AKT V+ + R++++ L DP P +A P N+ W + G P +G I
Sbjct: 29 VAKTSVSASGKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGI 84
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 39.5 bits (88), Expect = 0.001
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMITP 351
+PYEGG ++ I FP ++PFKPP TP
Sbjct: 49 TPYEGGMFNLSIKFPTDYPFKPPKFTFKTP 78
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 134 TGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGRRKVPTKG 277
T A RL +D+ RL+ DP ++ P +NI+ W+ V+ G P G
Sbjct: 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDG 50
Score = 27.9 bits (59), Expect = 4.5
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +1
Query: 256 EKSPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+ +P++GG + + F ++P KPP++ ++
Sbjct: 44 DDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS 74
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 134 TGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGRRKVPTKG 277
T A RL +D+ RL+ DP ++ P +NI+ W+ V+ G P G
Sbjct: 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDG 50
Score = 27.9 bits (59), Expect = 4.5
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +1
Query: 256 EKSPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+ +P++GG + + F ++P KPP++ ++
Sbjct: 44 DDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS 74
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 134 TGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGRRKVPTKG 277
T A RL +D+ RL+ DP ++ P +NI+ W+ V+ G P G
Sbjct: 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDG 50
Score = 27.9 bits (59), Expect = 4.5
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +1
Query: 256 EKSPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+ +P++GG + + F ++P KPP++ ++
Sbjct: 44 DDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS 74
>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P35133 Ubiquitin-conjugating
enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 36.3 bits (80), Expect = 0.013
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+SPY GG + I FP ++PFKPP + T
Sbjct: 42 ESPYSGGVFLVNIHFPPDYPFKPPKVVFRT 71
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 366 TNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 482
+N +CL I D W+PA +IS +L + S + + P
Sbjct: 80 SNGNICLDILK---DQWSPALTISKVLLSICSLLTDPNP 115
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 35.9 bits (79), Expect = 0.017
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 134 TGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGRRKVPTKG 277
T A RL D+ RL+ DP ++ P +NI+ W+ ++ G P G
Sbjct: 3 TPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDG 50
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 256 EKSPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
E +P++GG + + F ++P KPP + ++
Sbjct: 44 EDTPWDGGTFKLTLHFTEDYPNKPPIVRFVS 74
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 35.5 bits (78), Expect = 0.022
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMIT----PNGSSRQTHDCASVLQ 396
+PYEGG + I P +PF+PP + T PN SS+ C +L+
Sbjct: 45 TPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILK 93
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 35.5 bits (78), Expect = 0.022
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSI 336
+SPY GG + I FP ++PFKPP +
Sbjct: 43 ESPYSGGVFLVTIHFPPDYPFKPPKV 68
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 145
Score = 35.5 bits (78), Expect = 0.022
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSI 336
+SPY GG + I FP ++PFKPP +
Sbjct: 42 ESPYSGGVFLVTIHFPPDYPFKPPKV 67
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 35.5 bits (78), Expect = 0.022
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSI 336
+SPY GG + I FP ++PFKPP +
Sbjct: 42 ESPYSGGVFLVTIHFPPDYPFKPPKV 67
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 35.5 bits (78), Expect = 0.022
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSI 336
+SPY GG + I FP ++PFKPP +
Sbjct: 42 ESPYSGGVFLVTIHFPPDYPFKPPKV 67
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 35.5 bits (78), Expect = 0.022
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSI 336
+SPY GG + I FP ++PFKPP +
Sbjct: 42 ESPYAGGVFLVSIHFPPDYPFKPPKV 67
>At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)
E2; identical to gi:2801444, GB:AAC39325 from
[Arabidopsis thaliana] (Plant Mol. Biol. 23 (2), 387-396
(1993))
Length = 161
Score = 35.5 bits (78), Expect = 0.022
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 366 TNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTPTLGSIETSRYQKRC 524
+N +CL I D+W+PA ++S+I +LS + T + RY K C
Sbjct: 94 SNGHICLDILY---DSWSPAMTVSSICISILSMLSSSTEKQRPTDNDRYVKNC 143
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 35.1 bits (77), Expect = 0.029
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSI 336
+SPY GG + I FP ++PFKPP +
Sbjct: 42 ESPYAGGVFLVTIHFPPDYPFKPPKV 67
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 35.1 bits (77), Expect = 0.029
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSI 336
+SPY GG + I FP ++PFKPP +
Sbjct: 42 ESPYAGGVFLVTIHFPPDYPFKPPKV 67
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 35.1 bits (77), Expect = 0.029
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSI 336
SPY GG + I FP ++PFKPP +
Sbjct: 73 SPYSGGVFLVTIHFPPDYPFKPPKV 97
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 35.1 bits (77), Expect = 0.029
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSI 336
SPY GG + I FP ++PFKPP +
Sbjct: 43 SPYSGGVFLVTIHFPPDYPFKPPKV 67
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 35.1 bits (77), Expect = 0.029
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSI 336
SPY GG + I FP ++PFKPP +
Sbjct: 43 SPYSGGVFLVTIHFPPDYPFKPPKV 67
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 33.9 bits (74), Expect = 0.068
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 375 RLCLSITDFHPD-TWNPAWSISTILTGLLSFMLEKTPTLGSI-ETSRYQK 518
R+CL I + P W P+ +IST+LT + + E P G + E SR K
Sbjct: 97 RICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYK 146
Score = 31.5 bits (68), Expect = 0.36
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 256 EKSPYEGGYYHGKIIFPREFPFKPPSIYMITP 351
E + Y G ++ KI P +PF+PP + TP
Sbjct: 55 EDTVYANGIFNLKIQIPERYPFQPPIVSFATP 86
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 33.1 bits (72), Expect = 0.12
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSI 336
SP+ GG + I FP ++PFKPP +
Sbjct: 43 SPFAGGVFLVTIHFPPDYPFKPPKV 67
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +2
Query: 140 ATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGRRKVPTKGDIIM 289
A+ R+ ++ L+ DP +A P ++ +W + G P G + +
Sbjct: 2 ASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFL 51
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 33.1 bits (72), Expect = 0.12
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSI 336
SP+ GG + I FP ++PFKPP +
Sbjct: 43 SPFAGGVFLVTIHFPPDYPFKPPKV 67
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +2
Query: 140 ATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGRRKVPTKGDIIM 289
A+ R+ ++ L+ DP +A P ++ +W + G P G + +
Sbjct: 2 ASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFL 51
>At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative
strong similar to ubiquitin-conjugating enzymes E2-17
from [Arabidopsis thaliana] SP|P35134, SP|P35132,
SP|P35133; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 149
Score = 33.1 bits (72), Expect = 0.12
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSI 336
SPY GG + I F ++PFKPP +
Sbjct: 44 SPYSGGVFTVSIDFSSDYPFKPPKV 68
>At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)
E2; identical to gi:2801448
Length = 161
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 366 TNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTPTLGSIETSRYQKRC 524
+N +CL I D+W+PA ++S++ +LS + + RY K C
Sbjct: 94 SNGHICLDILY---DSWSPAMTVSSVCISILSMLSSSPEKQRPTDNDRYVKNC 143
>At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 32.7 bits (71), Expect = 0.16
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+SPYEGG + ++ P E+P P + +T
Sbjct: 46 QSPYEGGVFKLELFLPEEYPMAAPKVRFLT 75
>At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 112
Score = 32.7 bits (71), Expect = 0.16
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+SPYEGG + ++ P E+P P + +T
Sbjct: 46 QSPYEGGVFKLELFLPEEYPMAAPKVRFLT 75
>At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 32.7 bits (71), Expect = 0.16
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+SPYEGG + ++ P E+P P + +T
Sbjct: 46 QSPYEGGVFKLELFLPEEYPMAAPKVRFLT 75
>At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 120
Score = 32.7 bits (71), Expect = 0.16
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+SPYEGG + ++ P E+P P + +T
Sbjct: 13 QSPYEGGVFKLELFLPEEYPMAAPKVRFLT 42
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 31.9 bits (69), Expect = 0.27
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 137 LSPLFLPCSHELLTFECLQFFE 72
+S +FLPC+H++L F+C Q E
Sbjct: 776 MSVIFLPCAHQVLCFKCNQLHE 797
>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) {Pichia angusta}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 157
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +1
Query: 259 KSPYEGGYYHGKIIFPREFPFKPPSIYMIT----PNGSSRQTHDCASVLQ 396
++PYEGG + P +P +PP + +T PN + C +L+
Sbjct: 46 ETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILK 95
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 360 FKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 482
FKT +CL I + W+PAW++ ++ +++ M P
Sbjct: 84 FKTG-EICLDILK---NAWSPAWTLQSVCRAIIALMAHPEP 120
>At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)
E2; identical to ubiquitin-conjugating enzyme 15
GI:2801442 from [Arabidopsis thaliana]
Length = 161
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 366 TNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTPTLGSIETSRYQKRC 524
+N +CL I D+W+PA +++++ +LS + + RY K C
Sbjct: 94 SNGHICLDILY---DSWSPAMTVNSVCISILSMLSSSPAKQRPADNDRYVKNC 143
>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
identical to gi:992703, SP:P42747
Length = 198
Score = 31.1 bits (67), Expect = 0.48
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 268 YEGGYYHGKIIFPREFPFKPPSI 336
YEGG+++ + FP+ +P PP++
Sbjct: 81 YEGGFFNAIMTFPQNYPNSPPTV 103
>At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative
similar to SP|Q16763 Ubiquitin-conjugating enzyme E2-24
kDa (EC 6.3.2.19) (Ubiquitin- protein ligase) (Ubiquitin
carrier protein) {Homo sapiens}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 251
Score = 31.1 bits (67), Expect = 0.48
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
+PYE G + K+ +FP PP Y +T
Sbjct: 52 TPYENGLFRMKLALSHDFPHSPPKGYFMT 80
>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
E2; UbcAT3; identical to gi:2129757, S46656
Length = 167
Score = 31.1 bits (67), Expect = 0.48
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 268 YEGGYYHGKIIFPREFPFKPPSI 336
YEGG+++ + FP +P PP++
Sbjct: 50 YEGGFFNAIMSFPENYPVSPPTV 72
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 31.1 bits (67), Expect = 0.48
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 268 YEGGYYHGKIIFPREFPFKPPSI 336
YEGG+++ + FP+ +P PP++
Sbjct: 49 YEGGFFYAIMSFPQNYPNSPPTV 71
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family protein
similar to ubiquitin-conjugating enzyme GB:3319990 from
[Mus musculus]; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 1163
Score = 30.7 bits (66), Expect = 0.63
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 253 AEKSPYEGGYYHGKIIFPREFPFKPPSIY 339
AE +PY G + I FP +P PP++Y
Sbjct: 956 AEGTPYHDGLFFFDIQFPDTYPSVPPNVY 984
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 253 AEKSPYEGGYYHGKIIFPREFPFKPPSIY 339
AE +PY G + I FP +P PP+++
Sbjct: 310 AEGTPYHDGLFFFDIQFPDTYPSVPPNVH 338
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 253 AEKSPYEGGYYHGKIIFPREFPFKPPSIY 339
AE +PY G + I FP +P PP ++
Sbjct: 644 AEGTPYHDGLFFFDIQFPDTYPSVPPKVH 672
>At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 907
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 184 PSTICYGRTCAVQHTGMALRR*RAEKSPYEGGYYHGKIIFPREFPFKPPSIY 339
P+TI Y R C + + A +PY G + I+ P ++P +PP ++
Sbjct: 679 PNTI-YVRVCEERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPHEPPMVH 729
>At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E2;
identical to gi:431269, SP:P42749
Length = 185
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
S YEGG + ++ P +P+K PS+ IT
Sbjct: 42 SIYEGGVWKIRVELPDAYPYKSPSVGFIT 70
>At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)
E2; identical to gi:2801446
Length = 161
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 366 TNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTPTLGSIETSRYQKRC 524
+N +CL + D+W+PA +S+I +LS + + + Y K C
Sbjct: 94 SNGHICLDVLY---DSWSPAMRLSSICLSILSMLSSSSVKQKPKDNDHYLKNC 143
>At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E2;
identical to gi:431265, SP:P42748
Length = 187
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSIYMIT 348
S Y+GG + ++ P +P+K PS+ IT
Sbjct: 42 SLYQGGVWKIRVELPDAYPYKSPSVGFIT 70
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 137 LSPLFLPCSHELLTFECLQFFE 72
+S +FLPC+H++L +C Q E
Sbjct: 768 MSVIFLPCAHQVLCSKCNQLHE 789
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 137 LSPLFLPCSHELLTFECLQFFE 72
+S +FLPC+H++L +C Q E
Sbjct: 768 MSVIFLPCAHQVLCSKCNQLHE 789
>At3g12090.1 68416.m01505 senescence-associated family protein
similar to senescence-associated protein 5 [Hemerocallis
hybrid cultivar] gi|3551954|gb|AAC34855
Length = 282
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 177 RMTQYH-MLRPNLCRPTYWNGITSLKGGEKSLRRGILSWK--DYFPKGI-SVQT 326
R+ YH LR + P YWN I S K+ + I SW DYF + + SVQ+
Sbjct: 113 RLGDYHPWLRERVRDPEYWNSIRSCILSSKTCTK-IESWTTLDYFQRDMTSVQS 165
>At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E2;
identical to gi|431267, SP:P42750, PIR:S52661; contains
a ubiquitin-conjugating enzymes active site (PDOC00163)
Length = 183
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 262 SPYEGGYYHGKIIFPREFPFKPPSI 336
S Y+GG + K+ P +P+K PS+
Sbjct: 42 SLYQGGVWKIKVELPEAYPYKSPSV 66
>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
similar to ubiquitin-conjugating enzyme (GI:3319990)
[Mus musculus]; similar to Baculoviral IAP
repeat-containing protein 6 (Ubiquitin-conjugating
BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
sapiens];
Length = 609
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 253 AEKSPYEGGYYHGKIIFPREFPFKPPSIY 339
A+ +PY G + I FP +P PP ++
Sbjct: 371 AQGTPYHDGLFFFDIFFPDTYPSTPPIVH 399
>At4g28250.1 68417.m04047 beta-expansin, putative (EXPB3) similar to
soybean pollen allergen (cim1) protein - soybean,
PIR2:S48032; beta-expansin gene family, PMID:11641069
Length = 264
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -1
Query: 333 RRWFERKFPWENNLSMIISPFVGTFLRPLTT*CHSSMLDGT 211
R W E K W N +I P G F LTT L T
Sbjct: 201 REWLEMKHVWGANWCIIGGPLKGPFSIKLTTLSAGKTLSAT 241
>At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme from [Oryza
sativa] GI:1373001, {Arabidopsis thaliana} SP|P35134,
SP|P35131; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 177
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 265 PYEGGYYHGKIIFPREFPFKPPSI 336
PYE G + + P ++P++PP I
Sbjct: 73 PYEKGVFTVSVHIPPKYPYEPPKI 96
>At1g56030.1 68414.m06433 MIF4G domain-containing protein / U-box
domain-containing protein low similarity to intermediate
filament filarin [Hirudo medicinalis] GI:4761082;
contains Pfam profiles PF02854: MIF4G domain, PF04564:
U-box domain
Length = 371
Score = 27.5 bits (58), Expect = 5.9
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +3
Query: 255 GEKSLRRGILSWKDYFPKGISVQ 323
G+K+L+ +++WKD + +G S++
Sbjct: 250 GQKNLKSQVITWKDKYDQGSSIR 272
>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
nearly identical to ubiquitin-conjugating enzyme UBC20
[Arabidopsis thaliana] GI:22530867; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 180
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 268 YEGGYYHGKIIFPREFPFKPPSI 336
+EG Y + F ++PFKPP +
Sbjct: 79 FEGTEYRLSLSFSNDYPFKPPKV 101
>At5g54880.1 68418.m06836 DTW domain-containing protein contains
Pfam domain, PF03942: DTW domain
Length = 394
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 306 KGISVQTTFDLHDNTEWQFKTNTRLCLSITDFHPDT 413
K + V T FD+HD E+ + C I H D+
Sbjct: 98 KNVGVTTVFDVHDEAEFLIRVIGSGCSKIDTNHLDS 133
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 27.1 bits (57), Expect = 7.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 64 TFYSKNCKHSKVNNSCEHGKNKGD 135
TF ++N K K+++ E+G+ KG+
Sbjct: 9 TFENQNLKRCKIDSEIEYGRKKGE 32
>At1g16840.4 68414.m02027 expressed protein
Length = 161
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 304 PREFPFKPPSIYMITPNGSSRQTHDCASVL 393
P PF P + Y + P GS Q+H A ++
Sbjct: 77 PDWLPFVPGASYWVPPPGSGSQSHGIAQLV 106
>At1g16840.3 68414.m02026 expressed protein
Length = 161
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 304 PREFPFKPPSIYMITPNGSSRQTHDCASVL 393
P PF P + Y + P GS Q+H A ++
Sbjct: 77 PDWLPFVPGASYWVPPPGSGSQSHGIAQLV 106
>At1g16840.2 68414.m02028 expressed protein
Length = 161
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 304 PREFPFKPPSIYMITPNGSSRQTHDCASVL 393
P PF P + Y + P GS Q+H A ++
Sbjct: 77 PDWLPFVPGASYWVPPPGSGSQSHGIAQLV 106
>At1g16840.1 68414.m02025 expressed protein
Length = 161
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 304 PREFPFKPPSIYMITPNGSSRQTHDCASVL 393
P PF P + Y + P GS Q+H A ++
Sbjct: 77 PDWLPFVPGASYWVPPPGSGSQSHGIAQLV 106
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,294,097
Number of Sequences: 28952
Number of extensions: 265259
Number of successful extensions: 816
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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