Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0825
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 104 1e-23
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 29 0.86
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 28 1.1
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.1
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.5
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 2.0
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 2.6
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 27 3.5
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 4.6
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 26 4.6
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 26 4.6
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 6.0
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 6.0
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 8.0
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 8.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.0
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 8.0
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 8.0
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 8.0
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 104 bits (249), Expect = 1e-23
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = +1
Query: 10 PIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQLLAEFP 189
P+RST+ S+DWHPNN+LL AG AD K V SAY++D++ +P +VWGS+LP + AE+P
Sbjct: 144 PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYP 203
Query: 190 NSPSGGGWVHSVSFSADGNKVA 255
+ GGWVH+V FS GN +A
Sbjct: 204 S----GGWVHAVGFSPSGNALA 221
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 545 LDSIHQNAISCIHIFKGT*SRTNKFSTSGLDGQLSYWDL 661
L ++HQN I+ + + GT F++SG DG++ W L
Sbjct: 339 LPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377
Score = 31.9 bits (69), Expect = 0.092
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 255 WVAHDSSINVTDATKG----RAVIKLKTEYLPFLGCSWITNNSLIVAGHSCIPLL 407
+ HDSS+ + + RA+I +K LP W ++++ AG++ P+L
Sbjct: 222 YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPIL 276
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 28.7 bits (61), Expect = 0.86
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVR 93
V ++DWHP+ LL +GS D V+
Sbjct: 209 VKTVDWHPSKGLLASGSKDNLVK 231
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVFS 102
V+SID++P LLV+GS D VR+++
Sbjct: 141 VSSIDFNPLGTLLVSGSWDETVRIWN 166
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVF 99
V S+DWHP ++++ SAD + V+
Sbjct: 271 VMSVDWHPTKEMILSSSADSSMIVW 295
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -3
Query: 625 STELVSARLSPFENMDARDSVLVYRVQECIAGLDTSMTI 509
STE +A L F DSVL+Y + + I GL+T++ I
Sbjct: 45 STEFSNA-LHTFGRFSDNDSVLIYDLCKSIIGLETNLGI 82
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 267 DSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVA 383
DSS+ + D G+ + L+ C+W T++ L+V+
Sbjct: 410 DSSVRLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVS 448
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVFS 102
V ++DW P+ + +G AD VR++S
Sbjct: 476 VFAVDWSPDGQRVASGGADKAVRIWS 501
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 357 ITNNSLIVAGHSCI--PLLYCHDGDDIKYVAKLDNTQRNESGGLSAMKKFQSLI 512
+ N L+ A S + P+LYCHD D +Y+ L S + + K S++
Sbjct: 216 LITNELLRAIESLLRRPMLYCHDPADYQYLLILLENPLLNSKSKNIVNKSSSIL 269
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 273 SINVTDAT--KGRAVIKLKTEYLPFLGCSWITNNSLIVAGHSCIP 401
SINV+ +T K VIK T P+L ++ +N+ +++ HS P
Sbjct: 47 SINVSKSTTKKSSVVIKPSTITAPWLENEYLDSNTSLLSVHSIQP 91
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVFS 102
V I +HP L V+G D+KV V++
Sbjct: 56 VRGIAFHPTQPLFVSGGDDYKVNVWN 81
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 617 FSTSGLDGQLSYWD 658
FST+G DG S+WD
Sbjct: 269 FSTAGSDGTFSFWD 282
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 136 PNVWGSKLPLGQLLAEFPNSPSGG 207
PN G + + A+FPNS +GG
Sbjct: 757 PNTQGINTEIKDMAAQFPNSQTGG 780
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 396 IPLLYCHDGDDIKYVAKLDNTQRNESGGLSAMKKFQSLIVM 518
+PL + + G +K A DN Q N++ L+ ++ LI++
Sbjct: 1 MPLAFTNPGTPLKRTAAYDNVQWNQNRILTFGTRYTVLIIV 41
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 10 PIRSTVTSIDWHPNNILLVAGSADFKVRVF 99
P +V + WHPN +L G D +V+
Sbjct: 298 PHSDSVLTGSWHPNGNILATGGQDTTAKVW 327
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSAD 81
V + WHP LLV+GS D
Sbjct: 426 VKVVTWHPTEDLLVSGSYD 444
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 52 YWDANQ*MSQSNEWA 8
+WDAN +SQ N+W+
Sbjct: 135 HWDANVTLSQENKWS 149
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSAD 81
V SI WHPNN +A + D
Sbjct: 216 VNSIAWHPNNATRLATAID 234
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 144 HIRSRLIFDILDIGREDSYFEVSRASDEQNVIGMP 40
H++ RLIFD++ + + V++A+ V+G P
Sbjct: 649 HLQERLIFDLMALPNQAWENIVAQAAQNAQVLGDP 683
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = +1
Query: 16 RSTVTSIDWHPN--NILLVAGSADFKVRVFSAYIK-DIEDQ 129
R+ + SI+WHPN +++ V G AD ++ ++ ++ D E+Q
Sbjct: 387 RAPIYSIEWHPNEDSVIGVVG-ADNQISLWDLSVELDEEEQ 426
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 46 PNNILLVAGSADFKVRVFSAYIKDIED 126
P +LLVAG D +V Y+K++++
Sbjct: 260 PEYLLLVAGGYDIRVSENRRYLKELQE 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,216
Number of Sequences: 5004
Number of extensions: 61983
Number of successful extensions: 208
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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