Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0825
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771... 52 6e-07
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 38 0.010
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533... 36 0.031
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 35 0.055
08_01_0801 - 7750548-7751708 31 0.89
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 31 1.2
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 30 2.1
05_03_0017 - 7392742-7393110,7393212-7393319,7393522-7394079,739... 29 2.7
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 29 3.6
03_04_0117 + 17411064-17411955,17412111-17413543 29 4.8
02_01_0579 - 4293528-4294117,4294561-4294762,4296145-4296348,429... 29 4.8
01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162... 29 4.8
11_01_0067 + 539152-540063 28 6.3
06_01_0715 - 5193648-5193897,5193987-5194255,5195011-5195350,519... 28 8.3
03_05_0224 - 22099472-22099813,22100496-22101032 28 8.3
01_06_0754 + 31721356-31721783,31721914-31722004,31722276-317223... 28 8.3
>02_05_1227 -
35076047-35076217,35076737-35076797,35077038-35077123,
35077213-35077301,35077685-35077766,35078094-35078136,
35078211-35078284,35078492-35078561,35078747-35078816,
35079275-35079369,35079473-35079549,35080725-35080760
Length = 317
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/79 (35%), Positives = 40/79 (50%)
Frame = +1
Query: 19 STVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQLLAEFPNSP 198
S+VTS+ WHPNNILL S D K RV S +IK ++ + + G+ +A+ S
Sbjct: 105 SSVTSVAWHPNNILLATTSTDGKCRVLSTFIKGVDTRGSHASTSTDWKFGEQIAQLDLSS 164
Query: 199 SGGGWVHSVSFSADGNKVA 255
W V +S G +A
Sbjct: 165 M---WAFGVRWSPSGKTLA 180
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 37.5 bits (83), Expect = 0.010
Identities = 31/80 (38%), Positives = 44/80 (55%)
Frame = +1
Query: 16 RSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQLLAEFPNS 195
RS + SID P+ LV+GSAD ++RVF+ K E+ G + W SK + +L E P
Sbjct: 62 RSEIWSIDVDPSERFLVSGSADQELRVFTVR-KSAEE--GED-W-SKWDMLKLFGEIPRQ 116
Query: 196 PSGGGWVHSVSFSADGNKVA 255
V +V F+ +GN VA
Sbjct: 117 SKER--VATVKFNKNGNLVA 134
>05_03_0376 -
13252220-13252354,13252433-13252541,13253279-13253337,
13253608-13253700,13254078-13254153,13254405-13254467,
13254535-13254629,13254743-13254845,13254930-13255024,
13255098-13255156,13255445-13255656,13256090-13256222,
13256691-13257081
Length = 540
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 19 STVTSIDWHPNNILLVAGSADFKVRVFS 102
+++TS+DWHP + + GSAD VRV S
Sbjct: 511 ASITSVDWHPTLPMYITGSADNSVRVTS 538
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 35.1 bits (77), Expect = 0.055
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVFSA 105
V S+DWHP LLV+G D+ V+++ A
Sbjct: 271 VKSVDWHPTKSLLVSGGKDYLVKLWDA 297
>08_01_0801 - 7750548-7751708
Length = 386
Score = 31.1 bits (67), Expect = 0.89
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 4 HEPIRS---TVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGS 153
HEPIRS +V +DW L G + SAY++ + D P P VW S
Sbjct: 53 HEPIRSGAFSVAGLDWVA--CLYADGYGVAGIDDVSAYLRLLGDAPTPRVWVS 103
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWG 150
+ ID+HP LL GSAD V+ + ++ GP G
Sbjct: 285 IRCIDFHPQEFLLATGSADRTVKFWDLETFELIGSAGPEATG 326
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWG 150
+ ID+HP+ LL GS+D V+ + ++ GP G
Sbjct: 210 IQCIDFHPHEFLLATGSSDKTVKFWDLETFELIGSTGPETTG 251
>05_03_0017 -
7392742-7393110,7393212-7393319,7393522-7394079,
7394186-7394311,7394396-7394521,7394673-7395137,
7396822-7396901,7397394-7397664
Length = 700
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = -3
Query: 385 PATIRELLVIQLHPKNGRYSVFSFMTALPLVASVTLIELSWATQQLYF 242
P+ I E+ + L +NG Y V +++ + L + L+ +SWA+ + +
Sbjct: 444 PSFIEEMKMFTLERQNGHYGVAAYIISNFLSSMPFLLAVSWASASITY 491
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGP 138
+ +D+HP+ LL GSAD V+ + ++ GP
Sbjct: 193 INCLDFHPHEFLLATGSADKTVKFWDLETFELIGSSGP 230
>03_04_0117 + 17411064-17411955,17412111-17413543
Length = 774
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = -3
Query: 400 GMQLXPATIRELLVIQLHPKNGRYSVFSFMTALPLVASVTLIELS----WATQQLYFRPQ 233
G+ PA+ EL + +H ++G + + + ++ LIE+S W Q++ Q
Sbjct: 595 GIDKLPASFIELENL-VHFRSGSTYLPHGFGRMKSILTLGLIEISDDTSWRIQEIGCLMQ 653
Query: 232 RRKRCGPNRH--LKANWETLLTVV 167
K C +R K NWE+LLTV+
Sbjct: 654 LEKLCIWSRDGMNKENWESLLTVI 677
>02_01_0579 -
4293528-4294117,4294561-4294762,4296145-4296348,
4296425-4296585,4296665-4297158,4297526-4297584,
4297766-4297841,4298511-4298552,4298757-4298860,
4299071-4299280
Length = 713
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 193 SPSGGGWVHSVSFSADGNKVAGSPTTAQST 282
SP+GG + S DGN+ A P+ QST
Sbjct: 515 SPAGGSGTGTDSIGYDGNQAATQPSQLQST 544
>01_06_1314 +
36215607-36215734,36215911-36216043,36216135-36216281,
36217172-36217348,36217469-36217717,36217917-36217964,
36218364-36218419,36218639-36218720,36219260-36219515,
36219563-36219629,36219688-36219724,36219918-36220030,
36220838-36220988,36221352-36221538,36221768-36221841
Length = 634
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -2
Query: 179 ANSCPKGNLEPHTFG-PG*SSISLI*AEKTRTLKSAEPATSKMLLGCQSIDVTV 21
AN K +L G PG SL+ + T A SK++ CQS DV V
Sbjct: 8 ANLAGKQSLRVVVIGDPGTGKSSLVVSAATEATSPAPEQRSKLIAECQSADVVV 61
>11_01_0067 + 539152-540063
Length = 303
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 572 R*RSGVSSPRMYRWSRYEH-DDQGLELLHSRQSPRLIPL 459
R R GV PR RW D +L ++ SP L PL
Sbjct: 150 RRRQGVEGPRRRRWRGLRRGSDPATAMLAAQDSPHLAPL 188
>06_01_0715 -
5193648-5193897,5193987-5194255,5195011-5195350,
5195691-5195845,5196547-5196557,5197632-5197689,
5197855-5198004,5198074-5198169,5198398-5198818,
5198835-5198950,5199041-5199149,5199483-5199532,
5200936-5201004,5201366-5201459,5201550-5201820,
5202273-5202607,5202718-5202786,5202834-5202904
Length = 977
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 364 LVIQLHPKNGRYSVFSFMTALPLVASVTLIELSWATQQLYFRPQRR 227
L + H S+ SF+ A P + + + S+A LY++P RR
Sbjct: 588 LRLYYHDSGNILSLASFLRASPCIEKLEIHFNSYALSHLYYQPIRR 633
>03_05_0224 - 22099472-22099813,22100496-22101032
Length = 292
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = +1
Query: 91 RVFSAYIKDIEDQPGPNVWGSKLPLGQLLAEFPNSPSGGGWVHSVSFSADGNKVAGS 261
RV +AY + P P V +K LG A+ +P GGW HS A VAG+
Sbjct: 33 RVAAAYHAASKLPPPPAV-ATKASLGGGCAD---APCAGGWCHSYGDGAAAAAVAGA 85
>01_06_0754 +
31721356-31721783,31721914-31722004,31722276-31722365,
31722952-31723078,31723237-31723280,31723749-31724009
Length = 346
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 202 GGGWVHSVSFSADGNKVAGSPTTAQ--ST*PTLL 297
GGG H+ + S DG AG PT Q +T PT L
Sbjct: 101 GGGDKHAAAQSDDGQHAAGEPTQEQAAATSPTEL 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,122,705
Number of Sequences: 37544
Number of extensions: 429373
Number of successful extensions: 1345
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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