Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0825
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31569| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_48470| Best HMM Match : HNOB (HMM E-Value=0) 32 0.39
SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22) 30 1.6
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09) 30 1.6
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15) 29 3.7
SB_16966| Best HMM Match : DUF598 (HMM E-Value=0.00017) 29 4.9
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22) 28 6.4
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_7130| Best HMM Match : Toxin_18 (HMM E-Value=5.7) 28 8.5
>SB_31569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 69.3 bits (162), Expect = 3e-12
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Frame = +3
Query: 309 VIKLKTEYLPFLGCSWITNNSLIVAGHSCIPLLYCHDGDD-IKYVAKLDNTQRNE-SGGL 482
V+ ++T+ LP + C WIT NS++ AGH+ +P L+ HD +D + + KLD ++ E SG +
Sbjct: 3 VVTIQTDLLPLMQCIWITENSIVAAGHNNMPYLFTHDDNDKLTLIGKLDAPKKKEDSGAI 62
Query: 483 SAMKKFQSL 509
SAM KF+SL
Sbjct: 63 SAMAKFRSL 71
>SB_48470| Best HMM Match : HNOB (HMM E-Value=0)
Length = 681
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 369 SLIVAGHSCIPLLYCHDGDDIKYVAKLDNTQRNESG 476
S +V CIP+L DG+++K VA + + N+SG
Sbjct: 394 SRVVDNLRCIPMLIDEDGEEVKDVASKNGKRENKSG 429
>SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)
Length = 195
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSAD 81
V IDWHP+ LLV+GS D
Sbjct: 158 VKCIDWHPHKSLLVSGSKD 176
>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
Length = 456
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 2 GTSPFVRL*HLLIGIPITFCSSLALLTSKYESSLPISRISKISLDRM 142
G FVR L + T C+ + + +S+++SS+P R + +S RM
Sbjct: 375 GLRAFVRKYPKLSAVDATNCAGVRVFSSEFDSSMPYGRKASLSDTRM 421
>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Frame = +1
Query: 22 TVTSIDWHPNN-ILLVAGSADFKVRVF--SAYIK-DIEDQPG 135
T+T+I WHP++ L AG +D ++RV+ +A IK I+D G
Sbjct: 295 TITAIAWHPSSRYLASAGGSDRQIRVWHNAAGIKVQIDDLKG 336
>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1373
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 479 TVCYEEVPVLDRHARIETSDTFLDSIHQ 562
T CY EVP L R E D +LDS H+
Sbjct: 968 TNCYIEVPTLSRDTGHEILDAWLDSKHR 995
>SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)
Length = 365
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 25 VTSIDWHP-NNILLVAGSADFKVRVFSAYIKDIEDQPGP 138
+TS++WHP + + A SAD ++ ++ ++ E GP
Sbjct: 278 ITSVEWHPTDGSVFAASSADNQITLWDLAVERDEAAEGP 316
>SB_16966| Best HMM Match : DUF598 (HMM E-Value=0.00017)
Length = 377
Score = 28.7 bits (61), Expect = 4.9
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Frame = -3
Query: 454 LSSLATYLISS-PSWQYNNGMQLXPATIRELLVIQLH-------PKNGRYSVFSFMTALP 299
+SS+ Y++S + NN MQL P +E+ V LH P + +T+
Sbjct: 127 VSSIMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCELQPIATGGTYIEEVTSFK 186
Query: 298 LVASVTLIELSWATQQLYFRPQRRKRCGPNRHLK 197
L+ +L+WA Y + +R R LK
Sbjct: 187 LLGVYISNDLTWAAHCEYVVKKANRRLYAIRQLK 220
>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
Length = 453
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 16 RSTVTSIDWHPNN-ILLVAGSADFKVRVFS 102
R T+T+I W+P+N +L + AD +V ++S
Sbjct: 61 RKTITAIAWNPHNEDILASAGADCRVLIWS 90
>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 524
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 94 VFSAYIKDIEDQPGPNVWGSKLPLGQLLAEFPNSPSGGGWVHSVSFS 234
V S++++ + NV+G L LLAEF S + W+ S+SFS
Sbjct: 22 VLSSFLQQLVIMGVHNVFG--LLYIDLLAEFKQSKAATAWIASLSFS 66
>SB_7130| Best HMM Match : Toxin_18 (HMM E-Value=5.7)
Length = 441
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 470 VWGTVCYEEVPVLDRHARIETSDTFLDSIHQNAISCIHIFKGT*SRTN 613
+W ++C + PV + T D +++ H++AIS + + T R N
Sbjct: 278 IWDSLCRYQGPVPFPYVSYSTFDAAINAFHRDAISHLLPYHVTYERVN 325
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,600,016
Number of Sequences: 59808
Number of extensions: 466712
Number of successful extensions: 1340
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -