Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0825
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical ...   114   7e-26
U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical ...    30   1.9  
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z74475-4|CAD01086.1|  185|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical
           protein Y79H2A.6 protein.
          Length = 368

 Score =  114 bits (274), Expect = 7e-26
 Identities = 48/83 (57%), Positives = 64/83 (77%)
 Frame = +1

Query: 7   EPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQLLAEF 186
           +PIRSTVT +DWH NN+LL  GS DFK RVFSAY+K+++++P PN WG K+P GQL++E+
Sbjct: 145 KPIRSTVTCLDWHSNNVLLAVGSCDFKCRVFSAYVKEVDEKPSPNPWGQKMPFGQLMSEY 204

Query: 187 PNSPSGGGWVHSVSFSADGNKVA 255
               S GGWVH V+FS  G ++A
Sbjct: 205 ----SVGGWVHRVAFSPSGCRLA 223



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
 Frame = +3

Query: 255 WVAHDSSINVTDAT-KGRAVIKLKTEYLPFLGCSWITNNSLIVAGHSCIPLLYCHDGDDI 431
           +V+HDSS++  D+T   + V  L T +LPF    WIT NS++ AGH C P+L+    D +
Sbjct: 224 FVSHDSSVSFVDSTVDSQKVQNLLTIHLPFTTVEWITENSVVTAGHDCSPVLFVVSQDVL 283

Query: 432 KYVAKLDNTQRNESGGL-SAMKKFQSL 509
           K V KLD     +S  + SA++ F+++
Sbjct: 284 KEVCKLDVPSAAKSSTVNSALQLFKNI 310



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +2

Query: 506 LDRHARIETSDTFLDSIHQNAISCIHIFKGT*SRTNKFSTSGLDGQLSYWDL 661
           +DR+   E  +  L ++HQN I+ I    GT     KF+T G DG ++ WDL
Sbjct: 310 IDRNNAAEKINVALKTLHQNRITQILPHSGTVGNVVKFTTCGTDGIVALWDL 361


>U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical
           protein K10D2.1b protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 25  VTSIDWHPNNILLVAGSADFKVRVFSA 105
           V +++W PN   L +GS D+++ +++A
Sbjct: 136 VLTVEWSPNGKYLASGSIDYRIIIYNA 162


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 25  VTSIDWHPNNILLVAGSADFKVRVFSA 105
           V +++W PN   L +GS D+++ +++A
Sbjct: 424 VLTVEWSPNGKYLASGSIDYRIIIYNA 450


>AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical
           protein Y50D4A.4 protein.
          Length = 622

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 336 PFLGCSWITNNSLIVAGHSCIPLLYCHDGDDIKYVAKLDN 455
           P L   W+TNN L++  +    LLY ++      + K  N
Sbjct: 76  PLLAVEWVTNNQLLLVNNHSAELLYINEDKKSSKLLKATN 115


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 25  VTSIDWHPNNILLVAGSADFKVRVFSA 105
           + ++  HP+NI  ++ SAD  +RV+SA
Sbjct: 254 INAVVLHPDNITAISASADSHIRVWSA 280


>Z74475-4|CAD01086.1|  185|Caenorhabditis elegans Hypothetical
           protein R04F11.5 protein.
          Length = 185

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 58  LLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQL 174
           LLVA   + K+R++S+   +++D P   +W + + +G L
Sbjct: 118 LLVASDYNDKLRIYSSQDSNLKDWPWTELWRNIVDIGAL 156


>U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical
           protein F13H8.2 protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 527 ETSDTFLDSIHQNAISCIHIFKGT*SRTNKFSTSGLDGQLSYWDLGTLGGHFK 685
           E S+  + S H+ A++CI       S    F+T G DG +  WD+    G F+
Sbjct: 92  EDSEPIMFSGHKKAVNCIEFS----SDGLLFATGGKDGVIVLWDILAERGMFR 140


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 25  VTSIDWHPNNILLVAGSADFKVRVFSAYIKDI-EDQPG 135
           V  + W  ++ LLV+GSAD  ++VF    K +  D PG
Sbjct: 405 VYQVAWSADSRLLVSGSADSTLKVFELKTKSLYYDLPG 442


>AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical
           protein K10C9.3 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 390 SCIPLLYCHDGDDIKYV 440
           SCIPL Y HDG+   Y+
Sbjct: 10  SCIPLAYSHDGEPFDYL 26


>Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical
           protein K04D7.3 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +3

Query: 507 LIVMLVSRPAIHSWTR--YTRTLSRA--SIFSKGLNRALTSSVLQVSTGSSHIGTWALW 671
           LI  LVSRPA+ S+ R  +   +S A  SI  KGL +A+ + +   S   + I T  +W
Sbjct: 105 LITSLVSRPALGSFPRTDFADGISHALTSIAPKGL-KAVQTMLCGTSANENAIKTAFIW 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,564,412
Number of Sequences: 27780
Number of extensions: 349476
Number of successful extensions: 1036
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)